Rhodoferax sp. BAB1: HTY51_03370
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Entry
HTY51_03370 CDS
T08955
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhob
Rhodoferax sp. BAB1
Pathway
rhob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HTY51_03370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhob03019
]
HTY51_03370
03009 Ribosome biogenesis [BR:
rhob03009
]
HTY51_03370
Enzymes [BR:
rhob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HTY51_03370
Messenger RNA biogenesis [BR:
rhob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HTY51_03370
Ribosome biogenesis [BR:
rhob03009
]
Prokaryotic type
rRNA processing factors
HTY51_03370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QKO20985
UniProt:
A0A6N0BM23
LinkDB
All DBs
Position
complement(686577..689486)
Genome browser
AA seq
969 aa
AA seq
DB search
MKRMLINATQAEERRLAIVDGQKLLDYEIEVEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRNYFQQGVSVSQARIQDAIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGDDRADLKEALDQLEYPNGMSIIARTAGIGRAAPELQ
WDLNYLLKLWTAIDGAAKGGKGAYLIYQESSLVIRAIRDYFNNDIGDILIDTDDVYEQAQ
QFMAHVMPEHAARVKRYRDNAPLFSRFQIEHQIESAYARTVNLPSGGAIVIDHTEALVSV
DVNSARAIKGSDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQ
ILRIIQEEAQKDNTAAVHVQVPVDVASFLLNEKRNEITKIELKQRLNVLMVPNKSLETPN
YKLERLKHDDPRLDHIEASYQMVEEIEDPTAVTRRSQEPTNKQTPVIKGVLPDAPAPIVA
PKPVAEPQAAAKPVARKAEQPASAGFVGWLKGLFGTKPAAEPAKTAEKKEEKREGRGGRD
GSRSEGRGEGRGRGGRGGRGERGERQERGDRSEQRGNRGERPGQRGDAEQRAPQTAEAGG
EQQPRQERAPRNGEQRGRGERGDQPRGERQERGNRGDRGDRQGQRGDTEQRAPQTAEAGG
EQQPRQERAPRNNEQRGRNGERGERQERGERTERGPRPEGERRPVEDLRQPLPAAAEQQL
APEAQGEADTQPMYDVRPEGETGSNGQRERRSRDRYGRDRQRGERGERQERPAQEAVAAD
APVSPESVPAAAPADTRTAPTPAAAPARAVAPAAAPAATGRALPRVQAYTLPLSDLDQIA
STAGLQWVNSDAGKIAVVQAAIAAEPKPVHVPRERPAPVVIDEGPLILVETRKDLRDMTL
PFEQGSAQN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgatcaacgccacgcaggccgaagaacgccgcctggccatcgtcgac
ggacaaaagctcctcgactacgaaatcgaggtcgaagggcgcgaacagcgcaagggcaat
atctacaaggccgtcgtcacgcgcgtcgagccctcgctggaagcctgcttcgtcgactac
ggcgaagaccgccacggtttcctgcccttcaaggaaatctcccgcaattatttccagcag
ggtgtatcggtcagccaggcccgcatccaggacgccatcaaggaaggccaggagctgctg
gtccaggtggaaaaggaagaacgcggcaacaagggcgccgccctgaccaccttcgtctcg
ctggccggccgttatgtcgtgctcatgcccaacaacccgcgtggtggtggcgtgagccgc
cgcatcgaaggtgacgaccgtgccgacctgaaggaagcgctcgaccagctcgagtacccc
aacggcatgtccatcatcgcgcgcaccgccggcatcggccgcgccgcgcctgaactgcag
tgggacctgaactacctgctcaagctgtggaccgccatcgacggcgctgccaagggcggc
aagggcgcctacctgatctaccaggaatcgagcctggtgatccgcgccatccgcgactac
ttcaacaacgacatcggcgacatcctgatcgacaccgacgacgtgtacgagcaggcccag
cagttcatggcacacgtcatgcccgagcatgccgcccgcgtgaagcgctaccgcgacaac
gcaccgctgttcagccgcttccagatcgagcaccagatcgagtcggcctacgcccgcacg
gtcaacctgccttcgggcggcgccatcgtgatcgaccacaccgaagccctggtctcggtg
gacgtgaactcggcgcgcgccatcaagggcagcgacatcgaggaaaccgccacccgtacc
aacctggaagccgccgacgaagtggcgcgccagatgcgcctgcgtgacctgggcggcctg
atcgtgatcgacttcatcgacatggaagagtcgaagaaccgccgcgaagtggagaaccgc
ctgcgcgatgccctgcgccaggaccgcgcccgcgtgcagttcggcaccatcagcaagttc
ggcctgatggagatgagccgccagcgcctgcgcccggccctctccgaaggtgcctccatc
ccctgcccgcgttgcggcggctccggccacatccgcgacaccgagagctcggccctgcag
atcctgcgcatcatccaggaagaggcccagaaggacaacaccgctgccgtgcacgtacag
gtgccggtggacgtcgcttccttcctgctcaacgagaagcgcaacgagatcaccaagatc
gagctcaagcagcgcctcaacgtgctgatggtgcccaacaagtcgctggaaacgccgaac
tacaagctcgagcgcctcaagcacgacgacccgcgtctggaccacatcgaggccagctac
cagatggtcgaggagatcgaggatcccaccgccgtcacgcgccgctcgcaggaaccgacc
aacaagcagaccccggtcatcaagggtgtgttgcccgatgcaccggccccgatcgtggca
ccgaaaccggtggccgagccgcaggcagcagccaagcccgtggcgcgcaaggccgagcag
ccggccagcgcaggttttgtcggctggctcaagggtctgttcggcacgaagccggccgcc
gagccggccaagaccgccgagaagaaggaagagaaacgcgaaggccgtggcggccgtgac
ggcagccgcagcgaaggtcgcggcgaaggccgggggcgtggcggccgcggaggccggggc
gagcgcggtgagcgccaggaacgtggtgatcgcagcgaacagcgcggcaaccgtggcgaa
cgcccgggccagcgcggcgacgccgagcagcgtgcaccccagacggccgaggccggcggt
gaacagcagccgcgccaggaacgcgccccgcgcaacggtgagcagcgtggtcgtggcgag
cgcggtgatcagccgcgcggcgagcgccaggaacgaggcaaccgtggcgatcgtggcgac
cgtcaaggtcagcgcggcgacaccgagcagcgcgccccccagacggccgaggccggtggt
gagcaacagccgcgccaggaacgcgccccgcgcaacaacgaacagcgtggccgcaatggc
gagcgcggtgaacgccaggaacgcggtgagcgcactgagcgtggcccgcgtcccgaaggc
gagcgccgtcccgtcgaggacctgcgccagccgctgccagccgctgcggaacagcaactg
gcgcctgaagcccagggcgaagccgacacccaacccatgtacgacgtgcgccccgaaggc
gaaaccggcagcaacggccagcgcgagcgccgctcgcgtgaccgttacggccgtgaccgc
caacgtggcgagcgtggtgaacgccaggagcgcccggcacaggaagccgtcgcagccgat
gcgcccgtgagccccgagagcgtgccggccgcagcaccggccgacacccgcacagcgccc
acgccggcagcagcccccgccagggccgttgcaccggctgccgcccccgcggcgaccgga
cgtgcgctgccgcgcgtgcaagcctataccctgcccctgtccgacctggaccagatcgcc
agtacggcgggcctgcaatgggtcaactccgatgccgggaagatcgccgtcgtccaggct
gccatcgccgccgaacccaagccggtgcacgtgccgcgcgagcggccggcgccggtggtg
attgacgagggtccgctgatcctggtcgagacgcgcaaggacctgcgcgacatgaccctg
cccttcgagcagggttctgcccagaactga
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