Rhodoferax sp. BAB1: HTY51_05610
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Entry
HTY51_05610 CDS
T08955
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhob
Rhodoferax sp. BAB1
Pathway
rhob03030
DNA replication
rhob03430
Mismatch repair
rhob03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HTY51_05610 (dnaE)
03430 Mismatch repair
HTY51_05610 (dnaE)
03440 Homologous recombination
HTY51_05610 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhob03032
]
HTY51_05610 (dnaE)
03400 DNA repair and recombination proteins [BR:
rhob03400
]
HTY51_05610 (dnaE)
Enzymes [BR:
rhob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HTY51_05610 (dnaE)
DNA replication proteins [BR:
rhob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HTY51_05610 (dnaE)
DNA repair and recombination proteins [BR:
rhob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HTY51_05610 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QKO21396
UniProt:
A0A6N0BM04
LinkDB
All DBs
Position
complement(1146716..1150189)
Genome browser
AA seq
1157 aa
AA seq
DB search
MFAHLRLHTEFSVVDGTVRIEDIVKAAARDGQPALAITDLNNLFGAIKFYKEARGKGVKP
LIGVEIMLEGLGQDPLATSRLLLLVQNKQGYLNLSEIIARAWTGNVVKAQAVVKLAWLKE
LHEGLIALSGAQAGAVGQALVQGDAERAHEAALQLSTIFPHRFYLELQRAGRSDDEAHVT
AAVQLAARMKLPVVASHPVQFATPDDYEAHEARVCISEGEILGNPRRVRKFTREQYFKTA
GQMQALFADLPSAVANTLEIAKRCNLTLVLGKPQLPNFPIPGGLSIEEYFRKVSFEGLEE
RLTHLYPDAVKRDSERSRYVERLEFEINTILKMGFPGYFLIVGDFIQWAKANGCPVGPGR
GSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQANRDRVIDYVKDKY
GKEAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGQHITIADAIQAEPI
LAERLEKEDEVKTLLALAQKLEGLTRNVGMHAGGVLIAPGKLTDFCPLYQQPGSDAAVSQ
YDKDDVEAVGLVKFDFLGLATLTILEIAREFIMARHPGQENFAFENIPLKDKPTYQLFQE
GKTEAVFQFESRGMQGMLRDAKPTRLEDLIALNALYRPGPMDLIPSFVARKHGREEVEYP
HPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLRRAMGKKKAEEMAEHREKFRA
GALATHNIPQNKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTAWLKVHYTAEFFCANMT
VEMDDTDKLKVLFEDAIKMGMAFEAPDVNRGHYRFEPISDKAIRYGLGAVKGTGQQAIEA
IVKARAEGGPFTSLYDFCVRVDRTRLNKRSIEALIKAGAFDSLQLNRASLVASIDRAFDF
ANATAANVNQGGLFDLGDDSHGASTQEPELVEALPWGVKERLTAEKTAVGFYLSGHLFDE
VSMEVRRFAKRELADLIDTREPQLLAGIVSDFRVINGQRGKLALFKLDDKTAVLDARVDE
ALMNANRNLLKDDELIIVMAKAMPDRFSGGLQLNINQVWSLEAARCRFGKYLRVAVNGRA
PDVQRLVAEHPPKREMTEQGELLRGLGVRLSLRRHGADIAAAAELQLGEDAKFYPSDAAL
AGWMAQADQGRAVIVYE
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcccatctgcgcctgcacaccgagttctccgtcgtcgacggcaccgtccgcatc
gaggacatcgtcaaggccgcagccagggatggtcagccagcgctggccatcaccgacctg
aacaacctgttcggggccatcaagttctacaaggaagcgcgcggcaagggcgtcaagccc
ctgatcggcgtcgagatcatgctcgagggcctgggccaggacccgctggcgacctcgcgc
ctgttgctgctggtgcagaacaagcagggttacctcaacctttccgaaatcatcgcgcgg
gcctggaccggcaatgtggtgaaggcccaggccgtggtcaagctggcctggctgaaggaa
ctgcacgaggggctgatcgcgctttccggcgcgcaggccggtgccgtgggccaggccctg
gtgcagggcgatgccgagcgcgcgcacgaggcggcgctgcaactgtccaccatcttcccg
caccgtttttacctggaactgcagcgcgccgggcgatcggacgacgaggcccatgtgacg
gccgccgtgcaattggccgcgcgcatgaagctgccggtggtggccagccacccggtgcag
ttcgccacgcccgacgactacgaggcacacgaggcacgcgtctgcatctccgaaggcgag
atcctgggcaacccgcggcgggtgcgcaagttcacgcgcgagcagtacttcaagaccgcc
gggcagatgcaggcgctgtttgccgacctgcccagcgccgtggccaacacgctggagatt
gccaagcgttgcaacctgaccctggtgctgggcaagccgcagctgcccaacttccccatc
cccggcggcctgagtatcgaggagtacttccgcaaggtctccttcgagggcctggaggag
cggctgacccacctctacccggacgccgtcaaacgcgattccgagcggtcgcgctacgtg
gaacgcctcgaattcgagatcaacaccatcctgaagatgggcttcccgggttatttcctg
atcgtgggtgacttcatccagtgggccaaggccaacggctgcccggtcggcccgggccgc
ggctcgggcgccggctcgctggtggcctatgcgctgaagatcaccgatctggacccgctg
gaatacaagctgctgttcgagcgcttcctgaacccggaacgcgtctcgatgccggacttc
gacatcgacttctgccaggccaaccgcgaccgcgtgatcgactacgtgaaggacaagtac
ggcaaggaggcggtcagccagatcgccaccttcggcaccatggccgcacgcgccgccatc
cgtgacgtgggacgcgtgctcgacatgagctacaccttctgcgacggcatctccaagctc
atccccaacaagccgggccagcacatcacgattgccgacgccatccaggccgagcccatc
ctggccgaacggctggagaaggaggacgaggtcaagaccctgctggcactggcccagaag
ctcgaaggcctgacgcgcaacgtcggcatgcacgccggcggcgtgctgatcgccccgggc
aagctgactgacttctgcccgctctaccagcagcccggcagcgacgcggcggtgagccag
tacgacaaggacgacgtggaggccgtgggcctggtcaagttcgacttcctgggcctggcc
acgctgaccatcctggagatcgcgcgcgagttcatcatggcgcgccacccgggccaggaa
aacttcgccttcgagaacattccgctcaaggacaagcccacttaccagctgttccaggaa
ggcaagaccgaggccgtgttccagtttgaaagtcgcggcatgcaaggcatgctgcgcgac
gccaagcccacgcgcctggaagacctgatcgccctcaacgccctgtaccgcccgggcccc
atggacctgatcccaagtttcgttgcacgtaaacatgggcgagaagaagtcgagtacccg
cacccggcggtggccgagatgctgtccgagacctacggcatcatggtctaccaggagcag
gtgatgcagaccgcgcagatcctgggcggctactcgctgggcggcgccgacctgctgcgc
cgtgccatgggcaagaagaaggccgaggagatggccgagcaccgggagaaattccgtgcc
ggcgcactggcgacccacaacattccccagaacaaggccgacgaggtcttcgacctgatg
gagaagttcgccggctacggcttcaacaagtcgcacgccgccgcctactccctgctggcc
taccacacggcctggctcaaggtgcactacacggccgagttcttctgcgccaacatgacc
gtggaaatggacgacacggacaagctcaaggtgctgttcgaggacgcgatcaagatgggc
atggccttcgaggcgccggacgtcaaccgcggccattaccgcttcgagcccatttccgac
aaggccatccgctacggcctgggtgcggtcaaaggcacgggccagcaggccatcgaggcc
atcgtgaaggcgcgtgcagaaggtggccccttcaccagcctgtacgacttctgcgtgcgc
gtggaccgcacgcgtttgaacaagcgcagcatcgaggcgctgatcaaggccggcgccttc
gactccctgcagctcaaccgcgcgtcgctggtcgcctcgatcgaccgcgcctttgacttt
gccaatgccaccgcggccaacgtcaaccagggtggcctgttcgacctgggtgacgacagc
cacggcgccagcacgcaggagcccgagctggtggaagccctgccctggggcgtgaaggaa
cgcctcacggccgagaagaccgccgtgggtttctacctctcgggccatctgttcgacgag
gtatccatggaggtccgccgcttcgccaagcgcgaactggccgacctgatcgacacgcgc
gagccccagttgctggccggcatcgtcagcgatttccgtgtcatcaacggccagcgcggc
aagctggccctgttcaagctcgacgacaagacagccgtgctcgacgcccgtgtggacgag
gcgctgatgaacgccaaccgcaacctgctcaaggacgacgagctcatcatcgtgatggcc
aaagccatgccggaccgtttttccggcggcctgcagctcaacatcaaccaggtctggagc
ctggaggcagcgcgctgccgcttcggcaagtacctgcgcgtcgcggtcaacggccgcgca
ccggatgtgcagcgcctggtggccgaacatccgcccaaacgggagatgaccgaacagggt
gaattgctgcggggcctgggcgtgcgcctgtccctgcgccgccatggcgcggacattgcg
gcggcggctgaactgcagctgggagaggatgcgaagttctatcccagcgatgcggcgctg
gccggctggatggcccaggccgaccagggccgcgccgtcatcgtctacgagtga
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