Rhodoferax sp. BAB1: HTY51_06005
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Entry
HTY51_06005 CDS
T08955
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rhob
Rhodoferax sp. BAB1
Pathway
rhob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HTY51_06005 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhob03021
]
HTY51_06005 (rho)
03019 Messenger RNA biogenesis [BR:
rhob03019
]
HTY51_06005 (rho)
Transcription machinery [BR:
rhob03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HTY51_06005 (rho)
Messenger RNA biogenesis [BR:
rhob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HTY51_06005 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_25
PirA-like
Motif
Other DBs
NCBI-ProteinID:
QKO21466
LinkDB
All DBs
Position
complement(1233627..1234889)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLNELKVLHVSEILKQAEELEIENTGRMRKQELMFAIIKKRAKTGEQVFADGVLEILPD
GFGFLRSPDSSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALNKLEKVN
GGSPETNKHKVMFENLTPLFPKVQMKLEQDIKGEENITGRVIDIIAPIGKGQRALIVAQP
KSGKTVMMQHIAHAISANYPDSYLMVLLIDERPEEVTEMQRTVKGEVIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALQRPKRF
LGAARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSEIHLDRRLYEKRVFPSIQL
NRSGTRREELLLQPEILQKTRILRQFLYNMDEIESMEMVLKQMRATKNNNEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacttaaacgaactcaaggtactgcacgtctctgaaatcctcaagcaggccgaagag
cttgagatcgagaacaccggccgcatgcgcaagcaggagctgatgttcgccatcatcaag
aagcgcgccaagaccggtgaacaggtgtttgccgacggtgtgctggaaatcctgcccgac
ggtttcggtttcctgcgcagcccggattcgagctacaccgccagcaccgacgacatctac
atcagtcccagccaggtgcgccgtttcaacctgcacaccggcgacatgatcgaaggcgaa
gtccgcacccccaaggacggcgaacgctactttgccctgaacaagctggagaaggtcaac
ggcggctcgcccgagaccaacaagcacaaggtgatgttcgagaacctgacgccgctgttc
cccaaggtgcagatgaagctggaacaggacatcaagggcgaggaaaacatcaccggccgt
gtcatcgacatcatcgcccccatcggcaagggccagcgcgccctgatcgtggcgcagccc
aagagcggcaagaccgtgatgatgcagcacatcgcgcacgccatctcggccaactacccc
gacagctacctgatggtgctgctgatcgacgagcgtccggaagaagtgaccgagatgcag
cgcaccgtcaagggcgaggtgattgcctccaccttcgacgaacccgccgcccgccacgtg
cacgtggccgagatggtgatcgagcgggccaagcgcctggtcgagctgaagaaggacgtg
gtgatcctgttggactccatcacccgcctggcccgggcctacaacaacgtcgtgccctcc
tccggcaaggtgctgaccggtggtgtggacgccaacgccctgcaacgccccaagcgtttc
ctgggcgcggcgcgcaacgtggaagaaggcggctcgctgaccatcatcgccacggccctg
gtcgataccggcagccgcatggacgaagtgatctttgaagaattcaagggcacgggcaac
agcgaaatccacctggaccgccgcctttacgaaaagcgcgtgttcccctccatccagctc
aaccgcagcggcacccgccgcgaagagctgctgctgcagcccgaaatcctgcagaaaacc
cgcatcctgcgccagttcctctacaacatggacgagatcgaatccatggaaatggtgctc
aagcagatgcgcgccactaagaacaacaacgagttcttcgacatgatgcgccgcggcggc
tga
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