Rhodoferax sp. BAB1: HTY51_07890
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Entry
HTY51_07890 CDS
T08955
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rhob
Rhodoferax sp. BAB1
Brite
KEGG Orthology (KO) [BR:
rhob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhob03019
]
HTY51_07890 (hrpA)
Enzymes [BR:
rhob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HTY51_07890 (hrpA)
Messenger RNA biogenesis [BR:
rhob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HTY51_07890 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
HA2_N
AAA_22
NACHT
AAA_19
T2SSE
nSTAND3
SRP54
AAA_25
AAA_30
AAA_23
TsaE
Motif
Other DBs
NCBI-ProteinID:
QKO21816
UniProt:
A0A6N0BN25
LinkDB
All DBs
Position
complement(1636429..1640337)
Genome browser
AA seq
1302 aa
AA seq
DB search
MSSSPLKIEFPESLPVSAKRDEIAAALAQHQVIIVCGETGSGKTTQLPKIALAMGRGKLN
YPAGQRGRLIGHTQPRRIAASSVAKRIAEELKTPLGEVVGYKVRFQDRLSKDASVKLMTD
GILLAETQTDPLLQAYDTIIIDEAHERSLNIDFLLGYLRQILPRRPDLKIVVTSATIDAD
RFAQHFASSKGPAPVIMVSGRTFPVEQRWRPFEESREFDLNDAIAEGVDELWQGNAAGDI
LVFLPGEREIREAADHLRKHLSHNAITRNAEVLPLFARLSQAEQDRVFDSHSGRRIVLAT
NVAETSLTVPGIRYVIDTGTARVKRYSFRSKVEQLMVEPVSQAAANQRAGRCGRVANGIC
IRLYDEKDFAGRERFTTPEILRSSLAGVILRMKSLHLGVVEDFPFLEMPSGRAIADGYQL
LAELGAVDEQNELTPMGRELAKLPLDPRVGRMILEAKARGALEEVLIIASALSVQDVRDR
PMEMQTQADQAHAKFDDEKSEFTGYLKLWKWINEARGDKHAHPAGAGATHKLSNRQYEQL
LRQNFVNIRRVREWRDIHSQLLTVVTEHKWQINTAPASYEQLHLSMLAGLLGNVGCKLEE
EASAGEYLGARGIKFHRHPGAHLSKRPGRWIVVAELVETTRLFGRGIANIEPGWIEQVAG
HLLKKQLLDPHWEKKAAEVVALERATLYGIVVYSGRRVNYGKVDPVAAREIFIREGIVGG
EWETKLPFIAANEKLIRQVEELEHKSRRQDVLVDDELIYAYYDQQLPADICSGYECERWY
REESKKNPNLLRLTREELMRHEAAGITTNAFPKTLRLGGVDCAVSYLHEPGDPRDGLTVS
VPLFVLNQVNEDRCEWLVPGMLKDKIQALLKSLPQRPRSRFVPLPESAAKLAETMGTPEA
FGRGGLTDALLKQVRDITSLDVKRADFKLDMLSPHLFMNFRVVDEHGRQMGTGRNLGALK
AELGAQARGAFQALAGLKLASQAQPNTVRPEPVEGQRVPGTTTASVRTEKNATAAPTVPA
DQRYTAWTFGELPELMEIRKGGQTLIGFPALIDLGEAVGIEVFDEPEVAAARHRGGLRRL
FALQIKDALKYLEKNIPELQKMAVAYMPLGTMEELRAQIIDVALERAFLLDPLPADEFDF
RKRLEEGRGRLTLIANEVARLAGVILIEYAAAVRKIKDTKNAPDATADCTQQLQRLMPKR
FIAQTPWPQLQHFARYLKAITARLDKYRADPARDAARLAELRPQEQRYWRLVAERKGVMD
ERLQEFRWLLEELRVSFFAQELRTPQPVSVKRLDKAWQQLNS
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
ttgagttcctctcccctgaaaatcgagttccccgagtcgctgccggtgtcggccaaacgc
gacgaaatcgcggccgccctggcgcagcaccaggtcatcatcgtctgcggcgagaccggc
tcgggcaagaccacccagctgcccaagatcgccctggccatgggccgcggcaagctgaac
taccccgccggccagcgcggccgcctgatcggccacacccagccgcgccggatcgccgcc
agctcggtggccaagcgcatcgccgaagagctcaagacgccgctgggcgaggtagtgggc
tacaaggtgcgtttccaggaccgcctgtcgaaagatgcgtccgtcaagctcatgaccgac
ggcatcctgctagccgagacccagaccgacccgctgctgcaggcctacgacaccatcatc
atcgacgaggcgcacgagcgcagcctcaacatcgacttcctgctgggttacctgcgccag
atcctgccgcgccgcccggacctcaagatcgtcgtcacctcggccaccatcgacgccgac
cgttttgcccagcactttgcatcgagcaagggcccggcgccggtcatcatggtctcgggc
cgcacctttcccgtggagcagcgctggcggccttttgaagaaagccgcgagtttgatctc
aacgacgccatcgcggaaggcgtggacgaactctggcaaggcaacgccgcgggcgacatc
ctggtcttcctgcccggagagcgcgagatccgcgaggccgccgaccacctgcgtaagcac
ctgagccacaacgccatcacgcgcaatgccgaggtgctgccgctgtttgcccgcctgagc
caggccgagcaggaccgcgtgttcgacagccacagcggccggcgcatcgtgctggccacc
aacgtggccgaaacctccctcaccgtgcccggcatccgctacgtgatcgacaccggcacg
gcccgcgtcaagcgctacagtttccgtagcaaggtagagcagctgatggtggagccggtc
agccaggccgccgccaaccagcgcgccggccgctgcggccgggtggccaacggcatctgc
atccgcctctacgacgagaaggactttgccgggcgtgagcgtttcaccacgcccgagatc
ctgcgctcctcgctcgccggcgtcatcctgcgcatgaagtccctgcacctcggtgtggtg
gaagacttccccttcctggaaatgccttccggccgcgccattgccgacggctaccagctg
ctggccgaactcggcgcggtggacgagcagaacgaactcacccccatgggccgggaactg
gccaaattgccgctggacccgcgcgtgggccgcatgatcctggaggccaaggcccgcggt
gcgctggaagaggtgctgatcatcgccagcgccctgagcgtgcaggacgtgcgcgaccgc
cccatggagatgcagacccaggccgaccaggcccatgccaagttcgacgacgagaaaagc
gagttcacaggctatttgaagctgtggaagtggatcaacgaggcccggggtgacaaacac
gcccacccggccggtgcaggggccacccacaagctgtccaaccgccagtacgaacagctg
ctgcgccagaacttcgtcaacatccgccgggtgcgcgagtggcgcgacatccacagccag
ctgctgaccgtggtgaccgagcacaagtggcagatcaacacggcccctgccagctacgaa
caactgcacctgtccatgctggctggcctgctgggtaacgtgggctgcaagctggaggaa
gaggctagcgccggtgagtacctgggggcgcgcggcatcaagttccaccgccacccaggc
gcgcacctgagcaaacggccgggccgctggatcgtggtggccgaactcgtggagaccaca
cgcctcttcggccgcggcatcgccaacatcgagcctggctggatcgagcaggtggccggc
cacctgctcaagaaacaactgctggacccgcactgggaaaagaaggccgccgaagtggtg
gcgctggagcgtgccacgctctacggcatcgtggtctacagcgggcgccgtgtgaactac
ggcaaggtggacccggtggccgcgcgcgagatcttcatccgtgaaggcatcgtgggcggc
gagtgggaaaccaagctgcctttcatcgccgccaatgaaaagctgatccgccaggtcgaa
gagctggagcacaagtcgcgccggcaggacgtgctggtggacgacgaactcatctacgcc
tattacgaccagcagctgccggccgatatctgcagcggttacgagtgcgagcgctggtac
cgcgaagaaagcaagaagaacccgaacctgctgcgactgacgcgcgaagaactcatgcgc
cacgaggccgcgggcatcaccaccaatgccttccccaagaccctgcgtttagggggagtc
gattgtgccgtcagctacctgcacgaacccggtgacccgcgcgatggcctcaccgtgagc
gtgccgctgttcgtgctgaaccaggtcaacgaggaccgttgcgagtggctggtacccggc
atgctgaaagacaagatccaggccctgctcaagagcctgccgcagcgcccgcgcagccgc
ttcgtgccgctgccggagtcggcggccaaactggccgagaccatgggcacgcccgaagct
ttcggccgcggcggcctgaccgatgcgctgctcaaacaggtgcgcgacatcaccagcctg
gacgtcaagcgcgccgacttcaagctcgacatgctgagcccccacctcttcatgaacttc
cgcgtggtggacgagcatggccgccagatgggcacaggccgtaacctcggcgcactcaag
gccgaactcggtgcgcaggcacgcggtgccttccaggccctggccgggctcaagctggcg
tcgcaggcccagcccaataccgttcgccctgagcctgtcgaagggcagcgcgtgccgggg
acaacgaccgcctcagtccgaacggagaagaatgcaacagccgcacccaccgtacctgcg
gaccagcgctacacggcctggacctttggcgagctgcctgagctcatggagatccgcaag
ggcgggcagaccctgatcggcttcccggccctgatcgatctgggcgaggccgtgggcatc
gaggtcttcgacgaacccgaggtggccgcggccagacaccgcggcggcctgcgccgcctg
ttcgccctgcagatcaaggacgcgctcaagtaccttgaaaagaacatccccgagctgcag
aagatggccgtggcctatatgcccctgggcacgatggaagaactgcgcgcccagatcatc
gacgtggcgctggaacgcgcgtttctgctggacccgctgccggccgacgaattcgatttc
aggaagcggctggaggagggcagaggccgcctgaccctgatcgccaacgaagtggcgcgc
ctggccggtgtcatcctcatcgaatacgctgcagcggtgcgcaagatcaaggacaccaaa
aacgcgcccgacgccacggccgactgcacccagcagctgcagcgcctgatgcccaaacgc
ttcatcgcccagaccccctggccgcaactgcagcactttgcccgttatctcaaggccatc
acggcccgcctggacaagtaccgcgccgacccggcccgcgacgcggcccgcctggccgag
ctgcgcccgcaggaacagcgctactggcgcctggtggccgagcgcaagggtgtgatggac
gagcgcctgcaggaattccgctggctgctggaggaactgcgggtgagcttttttgcgcag
gagttgcgtaccccgcaaccggtgagtgtgaagaggttggacaaagcttggcagcagctg
aacagctga
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