Rhodoferax sp. BAB1: HTY51_09210
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Entry
HTY51_09210 CDS
T08955
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rhob
Rhodoferax sp. BAB1
Brite
KEGG Orthology (KO) [BR:
rhob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rhob03009
]
HTY51_09210 (rlmD)
Enzymes [BR:
rhob01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HTY51_09210 (rlmD)
Ribosome biogenesis [BR:
rhob03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HTY51_09210 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_25
TRAM
MTS
Methyltransf_23
Methyltransf_11
PCMT
Motif
Other DBs
NCBI-ProteinID:
QKO22057
UniProt:
A0A6N0BUD1
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All DBs
Position
complement(1921034..1922470)
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AA seq
478 aa
AA seq
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MTEESNKNATFPPDSLRIESLDIEAQGIAHRADGKVVFVEGALPFEVVSASVNRRKNNWE
QATVTAIHQESSQRVRPGCPHFGLHAGACGGCKMQHLHPAAQVAVKQRVLEDNLWHLGKV
RAETVLRPIEGPAWGYRYRARLSVRHVRKKGTVLVGFHERKSRYVADMEVCPVLPPHVSA
MLMPLRALIGSLDAIETCPQIELACGDAVTALVLRHLEPLSAGDLAKLRAFAVLNPEVQW
WLQPKGPDTVHLLDDTPDALPLSYALPEFGITMPFKPTDFTQVNPHINRVLVSRALRLLD
AQKDERVIDWFCGLGNFTLPIATQAREVLGIEGSETLVARSRENLRGNQVTRPAGQALAP
TAFVARNLFEMTPELLIQDGVADKWLVDPPREGAFALAKTLADLHQQQVDPANHPATPGA
QGWTPPRRIVYVSCNPATLARDAGLLVHQAGYRCTQAGVVNMFPHTAHVESMAVFERA
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagaaagcaataaaaacgcaacttttccaccggacagcctccgtatcgaatcg
ctcgacatcgaggcccagggcatcgcccaccgggccgacggcaaggtggtgtttgtcgaa
ggcgcactgcccttcgaggtggtcagtgccagcgtcaaccgcaggaagaacaactgggag
caggccacggtcacggccatccaccaggagtcgtcccagcgcgtgcggcccggctgcccg
catttcggcctgcatgccggtgcctgcggtggctgcaagatgcagcatctgcatccggcg
gcccaggtggcggtgaagcagcgtgtgctggaggacaacctctggcatctgggcaaggtg
cgtgccgagaccgtgctgcgcccgatcgaggggccggcctggggttaccgttaccgcgcg
cgcctgtcggtgcgccatgtgcgcaagaagggcacggtgctagtgggtttccacgagcgc
aagagccgttacgtggccgacatggaggtctgcccggtgctgccgccccatgtgagcgcc
atgctgatgccgctgcgcgccctgatcggttcgctcgacgccatcgagacctgtccgcag
atcgagctggcctgcggtgatgcggtgacggccctggtgctgcggcacctggagcccctg
agcgccggggatctcgcgaaactgcgtgcctttgcggtcctgaacccggaggtgcagtgg
tggttgcagcccaaggggccggataccgtgcacctgctggatgacacgccggatgccctg
ccgctgagctacgcgctgcccgagttcggcatcaccatgcccttcaagccgaccgatttc
acccaggtcaatccgcacatcaaccgcgtgctggtctcgcgcgcgctgcgcctgctggat
gcgcagaaggacgagcgggtgatcgactggttctgtggcctgggcaacttcaccctgccc
atcgccacccaggcgcgcgaggtgctgggcatcgaaggcagcgagaccctggtggcgcgc
tcacgcgagaacctgcgcggcaaccaggtgactcgccccgccggacaggccctggcgccg
accgcttttgtggcgcgcaaccttttcgagatgacgcccgagttgttgattcaggacggt
gtggccgacaagtggctggtcgatccgccgcgcgagggcgctttcgccctggccaagacc
ctggccgacctgcaccagcagcaggtggatcccgccaaccacccggctacgccgggggcg
cagggctggacgccgccgcggcgcatcgtctacgtgagctgcaacccggccacgctggcg
cgcgacgccggtctgctggtgcaccaggcggggtatcgctgcacgcaggcgggggtggtc
aacatgttcccgcacaccgcgcacgtcgagagcatggcggtgttcgaacgggcctga
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