Rhodoferax sp. BAB1: HTY51_09315
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Entry
HTY51_09315 CDS
T08955
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
rhob
Rhodoferax sp. BAB1
Pathway
rhob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HTY51_09315 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhob03400
]
HTY51_09315 (sbcB)
Enzymes [BR:
rhob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
HTY51_09315 (sbcB)
DNA repair and recombination proteins [BR:
rhob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HTY51_09315 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HTY51_09315 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HTY51_09315 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QKO22076
UniProt:
A0A6N0BNT3
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All DBs
Position
complement(1943705..1945153)
Genome browser
AA seq
482 aa
AA seq
DB search
MSPNHTFLWHDYETFGLSPRRDRPAQFAGIRTDAELNEVGEPVMIYCQPANDYLPDPASC
LITGITPQQCLARGLPEHAFAAQIEQLLAQPGTIGVGYNTIRFDDEVTRFMLWRNLMDPY
AREWQNDCGRWDLLDVVRMAYALRPQGIQWPLKEDGKPSFKLEDLARANGLLHESAHDAL
SDVRATIALARLIRAAQPKLFDFCLGLHKKDRVAAELGLPTSAQAAQPFLHVSGMFPPER
GCLAIMWPLATHPSNKNELLAWDLAHDPGELAELDVATLRLRLFSKTAELPEGVQRLPLK
SVHLNKSPMVVRNLKTLSDEMAARWGVDMDAALRNAERARDLPDMSAIWPQVYQRPEEAA
PDVDEDLYGGFVGNADRRRLNQLRALDPAELAQRRTGFDDHRLGELLFRYRARNFAETLS
AEEVQRWQAHRAARLLEGENGARSVDEFLAALDTCAQTADARGEQILADLSDYAQAITPE
PL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgaatcacacttttctctggcacgactacgagaccttcggcctgagcccgcgc
cgtgaccggccggcgcagtttgccggcatccgcaccgatgccgagctgaacgaagtgggc
gagccggtgatgatctactgccagcccgccaacgactatctgcccgaccccgcctcgtgc
ctgatcaccggcattaccccccagcagtgcctggcgcgcggcctgcccgagcacgccttt
gctgcgcaaatcgagcagctgctggcccagccgggcaccatcggtgtgggctacaacacc
atccggttcgacgacgaggtcacgcgcttcatgctctggcgcaacctgatggacccctat
gcacgcgaatggcagaacgattgcggccgctgggacctgctcgacgtcgtacgcatggcc
tacgcgctgcggccccagggcatccagtggcctttgaaagaagacggcaagcccagcttc
aagctcgaagacctggcgcgcgccaatggcctgctgcacgagtccgcgcacgatgccttg
tcggacgtgcgcgccaccatcgccctggcgcggctgatacgcgccgcgcagcccaagctg
ttcgatttctgcctgggcctgcacaagaaggaccgggtggcggccgagctgggtctgccc
accagcgcgcaggcggcccagcccttcttgcatgtgtcgggcatgttcccgcccgaacgc
ggctgcctcgccatcatgtggccgctggcgacccacccgagcaacaagaacgaactgctg
gcctgggacctggcgcatgaccccggcgaactggccgagctcgacgtggcgacgctgcgc
ctgcggctgttcagcaagacagccgagctgcccgaaggcgtgcagcgcctgccgctcaag
tcggtgcacctcaacaaatcgcccatggtggtgcgcaatctgaaaaccctgagcgatgag
atggccgccaggtggggggtggacatggatgcggcgctgcgcaacgctgagcgcgcgcgc
gacctgcccgatatgagcgccatctggccgcaggtgtatcagcgccccgaggaagcggct
cccgacgtggacgaagacctctatggcggcttcgtcggcaatgcggatcggcggcggctg
aaccagctgcgcgcgctcgatcccgccgagctggcccagcgacgcaccggctttgacgac
caccggctcggcgaactgctgttccgctaccgtgcacgcaattttgccgagaccctgagc
gccgaagaggtgcagcgctggcaggcgcaccgggcggcgcgcctgctcgaaggcgagaac
ggcgcccgctcggtggatgagttcctggccgcgctggacacctgcgcgcagacggcggat
gcgcgcggcgagcagatcctggccgatttgtccgactacgcgcaggcgatcacgcctgag
cccctgtag
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