Rhodoferax sp. BAB1: HTY51_18025
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Entry
HTY51_18025 CDS
T08955
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhob
Rhodoferax sp. BAB1
Pathway
rhob03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhob00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HTY51_18025 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhob03021
]
HTY51_18025 (rpoC)
03400 DNA repair and recombination proteins [BR:
rhob03400
]
HTY51_18025 (rpoC)
Enzymes [BR:
rhob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HTY51_18025 (rpoC)
Transcription machinery [BR:
rhob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HTY51_18025 (rpoC)
DNA repair and recombination proteins [BR:
rhob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HTY51_18025 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QKO23656
UniProt:
A0A6N0BTG1
LinkDB
All DBs
Position
3723839..3728038
Genome browser
AA seq
1399 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDDYDAKVKEHGDEFTAKM
GAEGIKDLLQGIEIDTEIERLRGDLTGSELKVKKNAKRLKVLEAFKKSGIKPEWMVLEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVETGTPVVWDILEEVIKEHPVL
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPANGEPSIVPSQDVVLGLYYTTRERVNGKGEGMMFADTAEALRALDAGMV
ELTARVHVRLTEWTKDKDSGEFVPETKVVETTVGRALLSEILPKGLPFSNINKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISICIDDMLVPKEKGEIIESAEKEV
KDIEQQYTSGLVTSGERYNKVVDIWGKAGDKVSKVMMDQLRTEKTTDRHGKTVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTQDDCGTSEGSLMRAIVEGGEVIESLRDRVLG
RTAAEDVLHPESRVVLVPAGNMLDEDIIEELEAAGVDEVKVRTALTCATRFGLCAKCYGR
DLGRGGLVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGIIGFN
ATMRYVTNSKKELVVIARSGEIIIQDEHGRERERHKVPYGAILTVKADQAIKAGTILANW
DPLTRPIITEFAGKAHFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGSVKVVRPQVKLI
DASGNEVKIPGTDHSVTIGFQVGALIQVRDGQDVGPGEVLARIPIEGQKTRDITGGLPRV
AELFEARSPKDKGILAEVTGTVSFGKETKGKVRLQITDPEGKVWEELVPKEKNIVVHEGQ
VVNKGESIVDGPADPQDILRLLGMEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENPGDSGYIGGEQVERSEMLNTNDALRKDGKLPSTYTNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHDARKIREGMDEAERRA
IADAEAAELAQSSEGAATE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccctactcgacctgttcaagcagttcacgccggatgagcatttcgatgccatc
aagatcggcctggcctcgcccgagaagatccgttcctggtccttcggcgaggtgaagaag
cccgagaccatcaactaccgcaccttcaagcccgagcgtgacggcctgttctgtgccaag
atcttcggccccatcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagtcacgcagaccaaggtgcgccgtgag
cgcatgggtcacatcgacctggccgcgccttgcgcccacatctggttcctgaagtccctg
ccctcgcgcctgggcctggtgctggacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctatgtggtgaccgaccccggcatgaccccgctgaagaagttcagcatcatg
tccgaggacgactacgacgccaaggtcaaggaacacggtgacgagttcaccgccaagatg
ggcgccgaaggcatcaaggacctgctgcagggcatcgagatcgacaccgagatcgagcgc
ctgcgcggtgacctgaccggctccgagctgaaggtcaagaagaacgccaagcgcctgaaa
gtgctggaagccttcaagaagtccggcatcaagcccgagtggatggtgctggaagtgctg
cccgtgctgccgccggacctgcgtccgctcgttcccctggacggcggccgctttgcgacc
tccgacctgaacgacctctaccgtcgtgtcatcaaccgcaacagccgcctgcgtcgcctg
ctcgagctcaaggcgcccgagatcatcgcgcgcaacgagaagcgcatgctgcaggaagcc
gtggattcgctgctggacaacggccgccgtggcaaggccatgacgggcgccaacaagcgc
gcgctcaagtccctggcagacatgatcaagggcaagagcggtcgtttccgccagaacctg
ctgggcaagcgcgtcgactactccggtcgttccgtcatcaccgtgggcccgaccctcaag
ctgcaccagtgcggcctgcccaagctgatggccctggagctgttcaagcctttcatcttc
tcgcgcctggaagccatgggcatcgccaccaccatcaaggcggcgaagaaggaagtcgag
accggcacgccagtggtctgggacatcctggaagaggtgatcaaggagcacccggtgctg
ctgaaccgcgcaccgacgctgcaccgcctcggtatccaggccttcgagcccatcctgatc
gagggcaaggccatccagctgcacccgctggtttgtgccgccttcaacgccgacttcgac
ggcgaccagatggccgtgcacgtcccgctgtcggtggaagcccagatggaagcccgcacc
ctgatgctggcctccaacaacgtgctgttccccgccaacggcgagccctccatcgttcct
tcgcaggacgtggtgctgggcctgtactacacgacccgtgagcgcgtcaacggcaagggc
gaaggcatgatgttcgccgacaccgccgaagccctgcgcgccctggacgccggcatggtc
gagctgaccgcgcgcgtccacgtgcgcctgaccgagtggaccaaggacaaggattccggc
gagttcgtgcccgagaccaaggtcgtcgagaccacggtcggccgcgcgctgctgtcggag
atcctgcccaagggcctgcccttcagcaacatcaacaaggcgctgaagaagaaggaaatc
tccaagctgatcaatgtgtccttccgcaagtgcggcctgaaggagaccgtggtgtttgca
gacaagctgctgcaaaacggtttccgtctggcgaccaaggcgggcatttcgatctgcatc
gacgacatgctggtgcccaaggaaaagggcgagatcatcgagtcggccgaaaaagaggtc
aaggacatcgagcagcagtacacctcgggtctggtgacctccggcgagcgctacaacaag
gtggtggacatctggggcaaggccggcgacaaggtctccaaggtcatgatggaccagctg
cgcaccgagaagaccacggatcgccatggcaagacggtggaccaggagtccttcaactcc
atctacatgatggccgactccggtgcgcgcggctctgctgcgcagatccgccagctggcc
ggcatgcgcggcctgatggccaagcccgacggctccatcatcgagacgcccatcacggcc
aacttccgtgaaggcctcaacgtgctgcagtacttcatctccacgcacggcgcccgcaag
ggcctggccgacacggcgctgaagacggccaactccggctatctgacccgccgtctggtg
gacgtgacgcaggacctggtggtgacgcaggacgactgcggcaccagcgaaggttcgctg
atgcgcgccatcgtcgagggcggcgaggtgatcgagtcgctgcgcgaccgtgtgctgggc
cgtaccgcggccgaggacgtgctgcatccggaatcccgcgtcgtgctggtgccggctggc
aacatgctggacgaggacatcatcgaggaactggaagccgccggtgtcgacgaggtcaag
gtccgcaccgcgctgacctgcgccacgcgctttggcctgtgcgccaagtgctacggccgt
gacctcggccgtggcggcctggtcaacatgggcgaggcggtcggcgtgatcgctgcccag
tccatcggcgagccgggcacgcagctgaccatgcgtaccttccacatcggtggtgccgct
tcgcgtgcggccatcgcctccagcgtggaagccaagtccaacggcatcatcggcttcaat
gccacgatgcgctacgtgaccaacagcaagaaggagctcgtggtgatcgcccgttccggc
gagatcatcatccaggacgagcatggccgcgagcgtgaacgtcacaaggtgccttacggc
gccatcctgacggtcaaggctgaccaggccatcaaggccggcaccatcctggccaactgg
gatccgctgacccgcccgatcatcaccgagttcgccggcaaggcgcacttcgagaatgtc
gaagagggcctgaccgtggccaagcaggtggacgaagtcaccggcctgtccaccctggtc
gtgatcgaccccaagcgtcgcggttccgtcaaggtcgtgcgtccgcaggtcaagctgatc
gacgcctcgggcaacgaggtcaagatccccggcaccgaccactcggtgaccatcggcttc
caggtcggcgccctgatccaggtgcgtgacggccaggacgtgggcccgggcgaagtgctg
gcccgtatcccgatcgaaggccagaagacccgcgacatcaccggcggtctgccgcgtgtg
gccgagctgttcgaagcccgttcccccaaggacaagggcatcctggccgaggtcacgggt
accgtgtccttcggcaaggagaccaagggcaaggtccgcctgcagatcaccgatcccgaa
ggcaaggtctgggaagagctcgtgcccaaggaaaagaacatcgtggtgcacgaaggccag
gtggtcaacaagggcgagagcatcgtcgacggcccggccgacccgcaggacatcctgcgc
ctgctgggcatggaagagctggcacgttacatcgtggacgaagtccaggacgtctaccgc
ctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgtgcgccagatgctgcgc
cgtgtcgtggtcgagaacccgggtgactcgggctacatcggcggcgagcaggtggaacgc
tcggagatgctcaacaccaatgacgccctgcgcaaggacggcaagcttccctcgacctac
accaacctgctgctgggtatcaccaaggcctcgctgtccaccgacagcttcatcagcgcc
gcctccttccaggagaccacgcgcgtgctgaccgaagccgccatcatgggcaaacgcgac
gagctgcgcggtctgaaggaaaacgtcatcgtcggccgcctgatcccggcgggtaccggc
atggcctaccacgacgcccgcaagatccgcgagggcatggacgaggccgagcgccgcgcc
atcgccgatgcggaggccgccgagctggcccagagcagcgaaggcgctgccaccgagtaa
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