Rhodococcus sp. 008: AOT96_00650
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Entry
AOT96_00650 CDS
T05462
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhod
Rhodococcus sp. 008
Pathway
rhod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOT96_00650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhod03019
]
AOT96_00650
03009 Ribosome biogenesis [BR:
rhod03009
]
AOT96_00650
Enzymes [BR:
rhod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AOT96_00650
Messenger RNA biogenesis [BR:
rhod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AOT96_00650
Ribosome biogenesis [BR:
rhod03009
]
Prokaryotic type
rRNA helicases
AOT96_00650
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrA_inter
HEM4
Motif
Other DBs
NCBI-ProteinID:
ANQ69534
LinkDB
All DBs
Position
complement(156482..158257)
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AA seq
591 aa
AA seq
DB search
MSDIERDPEPPTFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTG
KTAAFAVPVLSRIDTSIKQTQALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSY
GVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILR
DTPGDKQVALFSATMPGSIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQRKLDA
LTRVLEVEAFEAMIIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGA
LDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERH
LLKSIEKATRQPLAEMQLPSVDDVNAQRVAKFGDSITESLASENLAMFRKMIEDYDQEHD
VPLIDIAAALALQSRDGEAFLLSPEPPAPPRREREPREPRPPRRFDDGPAPRSRGPEGQE
LAAYRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSIVELPADLSNETLEAL
RRTRISGVLIQLQPDFGPPQGRPSGRGDRGGRDDRGGRDDRRGGGRDRYND
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatattgagcgtgaccccgaacccccaacatttgccgacctcgacatcgatgat
cgggtactgaaggcactgtcagacgtgggctacgagtcgccctcgcccattcaggctgcc
accattccgccactgctcgaaggcaaggacgtcgtcggtctcgcacagaccggtaccggc
aagaccgcagccttcgcagttcccgttctgtcgcggatcgacacgtcgatcaagcagacc
caggcgctggtgcttgctcccacgcgtgagctggcgcttcaggttgccgaggccttcggc
aagtactccgcgcacatccccggactcaacgtcctgccgatctacggtggccagagctac
ggcgtccagctgtccggactgcgccgcggtgcgcacgtcgtcgtcggtacgcctggtcgt
gtcatcgaccatctcgaaaagggcaccctggatctgaccaatctcaagtacctcgttctg
gacgaggccgacgagatgctcaagatgggcttccaggaggacgtcgagcgcatcctccgc
gacacccccggcgacaagcaggtcgctctgttctcggcaacgatgcccggctcgattcgc
cggatctcgaagcagtacctgaacaatccggtcgagatcaccgtcaagtccaagacgtcg
accgcctcgaacatcacgcagcgctacattcaggttgctcatcagcgcaagctcgatgca
ctgacccgagtcctcgaggtcgaggcattcgaggcgatgatcatcttcgtgcgtaccaag
caggccaccgaagacctggcggagaagctgcgggcccgcgggcactcggctgccgcgatc
aacggcgacatcgtccaggcacagcgtgagcggaccatcggtcagctcaagaacggcgcc
ctcgacatcctcgtcgcgaccgacgttgccgctcgaggcctcgacgtggatcgaatctcc
cacgtcgtcaactacgacatcccgcatgacacggagtcgtacgtccaccgcatcggtcgt
accggccgcgccggtcgtcagggtgacgcgttgctgttcgtcgccccgcgtgagcgtcat
ctgctcaagtccatcgagaaggcgacccgtcagccgcttgcggagatgcagcttcccagt
gtcgatgacgtcaacgcccagcgcgtggccaagttcggtgactccatcaccgagagcctg
gcctcggagaatctcgcgatgttccgcaagatgatcgaggactacgaccaggaacacgac
gttccgctcatcgacatcgctgccgctctggcgttgcagtcgcgcgacggcgaagcattc
ttgctttctcccgagccgccggcaccgccgcgtcgtgagcgcgagcctcgtgaaccacgt
cctccccgtcgtttcgacgatggcccggccccgcgctcgcgtgggcccgagggccaggag
ctggccgcgtaccgcattgcagtcggcaagcgtcaccgcgtcgttccgggtgccatcgtc
ggtgccatcgccaacgagggtgggcttcgtcgaagcgacttcgggcacatcagcattcgc
ccggatcacagcatcgtcgagctgccggccgacctctccaacgagactctcgaagctttg
cgtcgcacacgcatctccggcgtcctgatccagctgcagcctgatttcgggccgccgcag
ggacgtccgagtggccgtggcgaccgtggtggccgggacgatcgtggtggacgtgacgac
cgccgcggtggcggacgcgatcgctacaacgactga
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