Rhodococcus sp. 008: AOT96_01700
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Entry
AOT96_01700 CDS
T05462
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhod
Rhodococcus sp. 008
Pathway
rhod03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOT96_01700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhod03400
]
AOT96_01700
Enzymes [BR:
rhod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOT96_01700
DNA repair and recombination proteins [BR:
rhod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AOT96_01700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
IstB_IS21
DUF3638
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ANQ74669
LinkDB
All DBs
Position
complement(383092..386718)
Genome browser
AA seq
1208 aa
AA seq
DB search
MTSLSSAQTALAGLAEVALADAAFTPVIESIGSAALDIVAPKPARPFIAAALAARTPVLL
VTATGREADDLTSELTEMLGGGVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDA
SYGSPLRVIVTTVRSLVQPMAPGLGEIEPITLRVGTEIDFDSVLVRLVEMAYSRVDMVGK
RGEFAVRGGILDLFSPTADHPVRIEFWGDEVSELRYFSVADQRSLADVDVDSVIAPPCRE
LILTADVRDRAAALAAENQADASLVEMLDKISAGIPVEGMEALLPVLKPGELQLLSDVLP
EGAHILLCDPEKVRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSILNGGGVDLGASAY
RSLRHVRESAEAAGRPWWTVSPLASGNGEELELPVHAAPQVRGSDDLLAELFVSLRAHVS
TGGRAAIVVAGAGTASRVVERLGEAEVPAKMLDAGATPARGQVAVLRGSLHDGLVLAGDD
STPGMVIVTESDLTGNRVAAVGDGKRLPAKRRNQVDPLALSAGDMVVHDQHGIGRFVEMV
ERTIGGARREYLVIEYAPSKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDWANT
KRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKELEDAFAFTETIDQLTVISEVK
ADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTERM
ASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHRLLQTGIRWKDLGLVIVDEEQR
FGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYVGAY
ADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKKIRELVPEARVVVAHGQMNEDTLEKT
VQGFWERDFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERGYAY
FLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFD
LYVRLVGEAVEAFRAAADGKPITMDEGTKEVRIDLPVDAHIPPDYVTSDRLRLEGYRKLA
AATDSDGIAAVVEELVDRYGPLPEEVRRLISVAKLRLLCREYQLEEVAVTGTQLKISPMS
LPDSKQIRLKRIYPSAQYRATTGLVQLPLPRTGGVGSDRLRDVELLQYIADFILAIDGRA
AGAVLVEA
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
ttgacttccttgtcctctgcccagactgcgctcgctggactcgccgaggtcgccctcgca
gatgccgcgttcactccggtgatcgaatccatcggctcggccgccttggacatcgtggct
ccgaagccggctcgaccgttcatcgccgctgcactcgccgctcgcacgccggtgctgctg
gtgacagccaccggtcgtgaagccgacgatctgacttcggaactcaccgagatgctcggt
ggaggcgtggcgcagtttccgtcgtgggaaacattgccgcacgagcgactgtcgccgagc
gcggataccgttgggcgacgggtggaggtactgcgcagactcgccagaccagacgacgcc
tcgtacggatcgcctcttcgggtgatcgtcaccacggtgcgctctctcgttcagccgatg
gcaccaggcctgggcgagatagaaccgatcacgttgcgcgtcggcaccgagatcgatttc
gattccgttctggttcgtctggtggagatggcgtacagccgcgtcgacatggtgggaaag
cgtggtgagttcgcggtccgtggtggcattctcgacctgttctcgccgacggcggatcat
ccggtccgtatcgaattctggggtgacgaggtatcggagcttcgctacttctcagttgcc
gatcagcgttcgctagcggacgtcgacgtcgattccgtgatcgcgccgccgtgtcgtgaa
ctgattttgacagctgatgttcgtgatcgagctgccgcactcgctgctgagaaccaggct
gacgcgtcgttggtcgagatgctggacaagatctcggcaggtatccccgtcgaggggatg
gaagctctgctcccggttctcaaacccggtgaactgcagctactttccgatgtacttcct
gaaggggcgcacattcttctgtgtgatccggaaaaggtgcgcacccgcgccaccgacctg
gtgcgcaccggccaggaattcttggaagcatcgtggacggcggcgtcgatcggcggcgct
gcaccgctcgacacgtcgatcctcaacggcggaggagtcgatctcggtgcctccgcgtac
cggtcgcttcgtcatgttcgcgaatctgccgaagctgccggccgaccctggtggacagtc
agcccgctggcgtcgggaaacggtgaagaactcgaactcccggtgcatgcggcaccgcag
gtgcgcggttccgacgacctgttggccgagctgttcgtcagccttcgggcgcacgtgagc
acgggcggtcgcgcggcgatcgtggtggcaggtgccggaaccgcaagccgcgtcgtggag
cgactcggtgaagccgaagtgcccgccaagatgctcgatgccggcgctacccccgcccgt
ggacaggtcgcggtgctccgcggatcactgcatgacggactggtactcgccggcgacgac
tcgacgcctgggatggtgatcgtcaccgagtccgatctgaccggcaaccgcgttgctgcg
gtcggcgacggaaagcgcttgccggccaagcgccgcaatcaggttgatcccctcgcgctg
tcggcaggggacatggtcgtgcatgatcagcacggtatcggccggttcgtcgaaatggtc
gaacgcaccatcggtggggcgcgtcgtgaatacctggtcatcgaatacgcgccgagcaag
cgcggtcacccgggcgatcgtctgttcgtcccgatggaatcgctcgatcaactctcccga
tacgtcggtggggagttgccggcgctgagcaagctcggtggatccgactgggcaaacacc
aagcgtaaggcccgcaaggcagttcgtgagatcgcgggcgagctggttcagctctacgca
gcgcgtcaggctgctcccgggcatgcgttcggcccggacacaccgtggcagaaggaactc
gaagacgcattcgcgttcaccgagacgatcgaccagttgaccgttatcagtgaggtcaag
gccgacatggagaagccggttccgatggaccgggtggtcatcggtgacgtcgggtacggc
aagacggagatcgccgtccgcgccgcgttcaaggcagtgcaggacggcaagcaagtggcg
gtgctggtgccgacgactctgcttgcacagcaacatcttcagaccttcaccgaacgaatg
gcgtcgttcccggtgaaggtgcgagggctgtcccggttcaccgacgccaaggactcgaag
gaaatcatcgccggcatggcggaaggtgagatcgacatcgtcgtcggtactcaccggttg
ctgcagaccggtattcgctggaaggacctcgggcttgtgatcgtcgacgaggaacagcga
ttcggagtcgagcacaaggaacacatcaaggcgttacgcacccacgtcgacgtcctgacg
atgtcggctaccccgattcctcgtactctcgagatgagcatggccgggatccgcgagatg
tccacgatcctcacaccgccggaagaacgtcatccgatcctcacgtacgtcggcgcgtat
gcggacaagcaggttgccgcggccatccggcgtgaacttctgcgcgacggccaggtcttc
tacgtacacaaccgtgtcagctcgatcgacaaggcagccaagaagatccgtgaacttgtc
ccggaggctcgcgtcgtcgtcgcgcacggtcagatgaacgaggacactctcgaaaagacc
gtgcaaggattctgggaacgcgacttcgacgtgttggtctgtaccacgatcatcgaaacc
ggtctggacatctcgaacgcgaacacactgatcgtggaacgtgcggattcgctgggcctc
tcgcagttgcatcagcttcgcggacgcgtcgggcgtagtcgtgaacgtggatacgcctat
ttcctgtacccggccgaaaagcctttgacggaaacggcatacgaccgactggcaacgatt
tcgcagaattcggacctcggcgcgggtatggccgtcgcgatgaaggacctcgaaatccgt
ggagccggaaacgttctgggcgcagagcagtccggccacgtcgcgggggtcgggttcgat
ctgtacgtcaggctggtcggtgaggcggtcgaagccttccgggctgcagccgacggcaaa
ccgatcacaatggacgagggcacgaaggaagtccggatcgacctaccggtggacgcgcac
atcccgcccgactacgtcaccagtgacaggctcaggttggaggggtaccgcaagctcgct
gcggcaactgattccgacggcatcgctgccgtagtcgaagaactggtcgatcgctacggc
ccactgcccgaagaggttcgacggctgatctcggtggccaagcttcgactgctctgccgc
gagtatcaactggaggaagtcgccgtcaccggaactcagctcaagatctcgcctatgtca
ctgcccgattccaaacagatcaggctcaagaggatctatccgagcgcgcagtaccgggca
acgaccgggctcgtgcaactcccgctgcctcgcaccggcggagtcggctcggatcgcctg
cgggacgtcgaattgctccagtacatcgcggacttcatcctggcgattgacgggcgcgcc
gccggtgccgtcctggtcgaggcgtga
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