Rhodococcus sp. 008: AOT96_21480
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Entry
AOT96_21480 CDS
T05462
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhod
Rhodococcus sp. 008
Pathway
rhod03420
Nucleotide excision repair
rhod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOT96_21480
03430 Mismatch repair
AOT96_21480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhod03400
]
AOT96_21480
Enzymes [BR:
rhod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOT96_21480
DNA repair and recombination proteins [BR:
rhod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AOT96_21480
MMR (mismatch excision repair)
Other MMR factors
AOT96_21480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
HRDC
UvrD_C_2
AAA_30
C1_1
Motif
Other DBs
NCBI-ProteinID:
ANQ73132
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Position
4624158..4626296
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AA seq
712 aa
AA seq
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MMVPMPADTGLDPEQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVADGHVSAGQVLA
VTFTARAAGEMRGRLRELGVGGSGPQVQARTFHAAALRQLKYFWPQVVGDTPWRLLDRKF
AVVSSAAARVGLSTSTESVRDLASEIEWSKASLIAPEDYPRAIAKIRREAPVDATKVAQV
YAAYEELKARGQDGMLLDFDDLLLHTAAALEEHSTVADEFRERYRCFVVDEYQDVTPLQQ
RVLDAWLGDRDDLTVVGDANQTIYSFTGATPNYLLDFSRKFPEATVVRLERDYRSTPEVV
SLANRVIGAARGRIAGTRLQLIGQRAPGPEPEFMEFDDEPAEALGVARAIKRLIAAGTPA
AEIAVLYRINAQSEAHEQALTKLGIPFQVRGGEGFFTRTEVRQAVAALRQAAGRDDLPEG
ADNGEALVSLVRAVLAPLGLTNEEPSGTQARERWASLSALVALTEEQLVHEPELTLTGLL
QELTARAEARHPPTVQGVTLASLHAAKGLEWDAVFLVGLNDGTLPIQHVLGDANSGADDV
AVEEERRLLYVGVTRAREHLQLSWALARNEGGRKSRRRSRFLNGLIPEDSPASRVAAPSS
GNKKRPRCRVCGKPLIGTSATMLGRCEKCPSNVDLELLEHLKAWRLDKSRELKVPAYVVF
SDNTLMAIAEQRPQDNRGLVSIPGIGPKKLDNFGEDVLAVIRGELRAATLDI
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgatggtccccatgcctgcggacaccggactggatccagaacaatcggccgccgtgctc
gcgccacgcggcccggtatgtgtcctcgcgggcgctggaacaggcaaaacccgcaccatc
acgcgccggatcgctcatctggttgccgacggtcacgtgtcggccggtcaggtgcttgcc
gtgacgttcaccgctcgtgcggccggggaaatgcgtggacgtctccgtgagctgggcgtc
ggcgggagtgggccgcaggtgcaggctcgaacttttcacgctgctgctctccgtcaactg
aagtacttctggccgcaggttgtcggcgacacgccgtggcgtctgctggaccgaaagttc
gccgttgtcagcagtgccgcagcccgggtgggattgtccaccagcacggaaagcgtccgc
gacctcgccagtgaaatcgagtggtcgaaggcgtcgctgatcgcgccggaggattaccca
cgcgcgatcgccaagattcgccgtgaggcaccggtcgatgccaccaaggtggcccaggtg
tatgccgcatacgaagagctgaaagcacgcggccaggacggcatgctgcttgatttcgac
gatctcctactgcacacggcggcagctctcgaagagcattcgacagtcgccgacgagttc
cgcgagcggtatcgctgcttcgtcgtggacgagtatcaggacgtcaccccactgcagcag
cgtgtgctcgacgcctggctgggcgaccgagacgatctgaccgtggtgggcgatgcgaat
cagaccatctactccttcaccggagccacccccaactatctgttggacttctcccggaaa
ttccccgaagcgaccgtcgttcggctcgaacgggattaccgctccacccctgaggtcgtg
tcgttggcgaaccgcgtgatcggtgccgcgcgcgggcggatcgccgggacgcgtctgcag
ctgatcgggcaacgcgcgccggggcctgagccggagttcatggagttcgacgacgagccg
gccgaagcactcggcgttgcgcgggcgatcaaacggctgatcgcggcaggcacccctgcg
gccgagatcgctgttctgtaccggatcaatgctcagtcggaggcgcacgagcaggccctg
acgaagctgggcattccgttccaggtgcgcggtggagagggcttcttcactcgcaccgag
gtacgtcaggcggtggcagcgctgcgtcaggcagctggacgcgacgacctccccgaaggt
gcagacaacggcgaagcgctggtctcactcgtccgcgctgtgctcgcgccgctcggcctg
accaacgaagagccttcgggtactcaggcacgcgagcgctgggcgtcgctctcggctctc
gtggcgctcaccgaagaacaacttgtccacgaacctgaactgacgctcaccgggcttcta
caggagctcacggcccgagccgaggcgcggcacccaccgaccgtgcaaggtgtgacgctg
gcctccctccacgcggccaaggggctcgaatgggatgcggtgttcctggtcggcctcaac
gacggcaccctgcctatccaacacgttctcggcgacgccaattcgggcgccgacgacgtc
gcggtggaggaggagcgtcggcttctctacgtgggggttactcgcgctcgcgagcatctg
cagctgtcgtgggcattggcccgcaatgaggggggacgcaagtcccgtcgccggtcgagg
ttcctcaacgggctcatccccgaggactcaccggcttcgcgcgttgccgcgccgtcgtcg
gggaacaagaagcgtccgcgctgccgcgtctgcggcaaaccgttgatcgggacgtcggcg
acaatgctcgggcgctgcgaaaaatgcccgtccaatgtcgacctggaattgctcgagcac
ctcaaggcctggcgtctggacaagtcccgagaactcaaagttccggcctatgtcgtcttc
agtgacaacacattgatggctattgccgaacaacgaccacaagacaatcgtggactggtt
tcgatccctggaatcgggccgaagaaactcgacaacttcggggaagacgtactagctgtc
attcgcggcgaactgcgtgcggcaacactcgatatctga
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