Rhodococcus sp. 008: AOT96_23030
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Entry
AOT96_23030 CDS
T05462
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rhod
Rhodococcus sp. 008
Brite
KEGG Orthology (KO) [BR:
rhod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhod03016
]
AOT96_23030
Enzymes [BR:
rhod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AOT96_23030
Transfer RNA biogenesis [BR:
rhod03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AOT96_23030
Prokaryotic type
tRNA splicing ligases
AOT96_23030
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ANQ73398
LinkDB
All DBs
Position
complement(4946420..4947601)
Genome browser
AA seq
393 aa
AA seq
DB search
MEKITKRLWNWASILDENTREQALRSSQMPFVRPHLALMPDAHLGAGATVGSVIPTEGAI
MPAAVGVDIGCGMIAVKTQFNARDLQGRDLSVLRHSIEHSVPLSAGVYNKTLSDTAQIRI
AELETMAGDRLAFYDKFKNNWRFQLGTLGSGNHFIEVTLDESDGVWLFLHSGSRGIGNKL
AQHHIKIAKDLCERWYINLPDPDLAYLVEKTPEFDSYITDLNWAQHFALLNREEMMDRVV
KDFAHFMGDGKPAIIDEVERINCHHNFTQKEFHMGRGVWLSRKGAIKADEGTPGLIPGSM
GTASYVVVGKGNVPSFKSSPHGAGRVYGRNQARKTFTIEDLDKAMVGIEYKRSSAFLDEI
PGAYKDIDVVMDDAKDLVEIRHTLRQIVNVKGN
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatcaccaagaggctgtggaactgggcatcgatactcgacgagaacactcgc
gagcaagcgctgcgttcgtcccagatgccttttgtccgtccacatctggcgcttatgccg
gatgcgcacctcggtgcgggagcgacggtgggttcggtcattccgacggaaggcgcaatc
atgcccgccgccgtcggagtcgatatcggctgcggaatgatcgcggtcaaaacccagttc
aacgcacgcgaccttcaagggcgcgacctgagcgtacttcgccacagcatcgaacactcc
gtcccgctctcggcaggtgtctacaacaagacgctgagcgacacggcgcaaatccgcatc
gcagaactcgagacgatggcgggcgatcgcctggccttctacgacaagttcaagaacaac
tggaggtttcagctcggaacgctgggctctggtaaccacttcatcgaggtgacactcgat
gaaagcgacggcgtctggctgttcctgcactcgggaagccgcggtatcggaaacaagctc
gcgcagcatcacatcaagatcgccaaggacttgtgcgagcggtggtacatcaaccttccc
gatccggatcttgcctacctggtcgagaagacacccgaattcgactcgtacataaccgat
ctcaactgggctcagcacttcgctctgctcaaccgcgaagagatgatggaccgcgtcgtg
aaggacttcgcgcatttcatgggagacggcaagccggcgatcatcgacgaagtcgagcgg
atcaactgccaccacaacttcacccagaaggagttccacatgggcaggggtgtgtggctg
agtcgtaagggtgcgatcaaggcagacgagggcacgcccgggctcatccccggttcgatg
gggacggcgagttacgtcgtcgtcgggaagggaaacgtaccgtcgttcaagtccagcccc
cacggcgcgggtcgggtgtacggacgtaaccaggcacgcaagaccttcaccatcgaagat
ctcgacaaggcaatggtcggcatagaatacaagcgttcctcggcgttcctcgacgagatc
ccgggtgcgtacaaggacatcgacgtcgtgatggacgacgcgaaggacttggtcgagatt
cgacacacgctgcgtcagattgtgaacgtcaagggcaactga
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