Rhodococcus sp. 008: AOT96_24230
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Entry
AOT96_24230 CDS
T05462
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rhod
Rhodococcus sp. 008
Brite
KEGG Orthology (KO) [BR:
rhod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhod03019
]
AOT96_24230
Enzymes [BR:
rhod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AOT96_24230
Messenger RNA biogenesis [BR:
rhod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AOT96_24230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
SLFN-g3_helicase
AAA_30
T2SSE
NACHT
ABC_tran
DUF7662
TsaE
PhoH
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ANQ73594
LinkDB
All DBs
Position
complement(5204354..5208259)
Genome browser
AA seq
1301 aa
AA seq
DB search
MSTTPPAPLSTKRSDLKSALAQVSLRDESRLRRKLDRARTPDALVALAEEIETARTRLAA
RSANVPAVSYPEALPVSQRKDDIATAISENQVVIVAGETGSGKTTQIPKICLELGRGVRG
LIGHTQPRRLAARTVAERIAEELDTELGDAVGYTVRFTDQVSDRTYVKLMTDGILLAEIQ
RDRMLRRYDTLIIDEAHERSLNIDFILGYLAQLLPRRPDLKVIITSATIDPERFAKHFAV
DGKPAPIVEVSGRTFPVEMRYRPLTVESGDITFDRDPVDAVCEAVDELSAEGEGDILVFL
SGEREIRDTADALRDRRLRNTEIVPLYARLSAAEQHKVFSPHTGRRVVLATNVAETSLTV
PGIRYVVDPGTARISRYSVRTKVQRLPIEPISQASARQRSGRCGRVAEGICIRLYSEEDF
ESRPAFTEPEILRTNLASVILQMTALGLGDIAAFPFVEPPDQRAVKDGIGLLEELGAIAR
GSEASHPELTPVGRELAQIPVDPRMARMLVEAKNNGCLHETLVIVAALSIQDVRERPAEF
QQAADEKHARFNVENSDFLAYLKLWDYLREQRNDLSSNQFRKMCRNEFLHWLRIREWQDL
HGQLRQITRGLGWTVGETPASENAIHQSLLAGLLSHIGLREGEKRDYLGARGSHFAIFPG
SGLFKKPPRWVMAAELVETSRLWARMSARIEPEWAEKLAPHLVKRTYSEPHWSSKRGSAM
AYERVTLYGVPLVTGRAVTYSRIDPEASRDLFIRHALVQGEWQTNHKFFHENRALLDNVE
ELENRARRRDILVDDETLYEFYDERVGQEAVSARHFDQWWKGERRKNPSLLTFTPETVVN
SDAAAVLGGEYPDAWRQGDMQFPLTYQFEPGKDDDGVSAHIPVGLLAQLQPVGFDWLVPG
MRVDLVTALIKTLPKNIRRAVVPAPDYAAAALAAVKPRSEPLMTAMARELSHLGGIQIDA
KDFDPAALPDHLRMTFVVEDESGKVLAKGKDLAQLRRTLAPRVQKEVAKAATGTERAAAT
VWTSETLGALEQTITRSIGGQQVTGYPALVPENGGVAVRVLSTPAAQAQAMREGTRALLL
AAVPTQLKAVTAGLSNTQRLALGQNPDGGLEALVEDCRVAAANEVIAAHGGPVRTPEAFD
ALVKIARSELAGRVSAILRMIVPILEQAHRLSVVLDRSRGEAADDVREQLTSLLFPGFVA
ELGSARLRDLPRYLAAAKFRLEALPASAQRDQQAMDVLDRVYAAYDRLLSSLPEERRTAR
DVDAISWMIEELRVSLFAQSLGTPTPISEKRVLKAIEAIKR
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgtctacaacaccaccggccccgctctccaccaagcggagtgacctgaagagcgcgctg
gcgcaggtctcactccgcgacgagagtcgactccgtcgcaaactcgaccgtgcccgcaca
ccagacgctttggtggcgctggccgaggaaatcgaaacggcgcgcacgcggttggccgca
cgctccgccaatgttcccgcagtctcgtatccggaagctctgcccgtcagtcagcgcaag
gacgacatcgcgaccgcgatctcggagaatcaggttgtcatcgtcgccggcgagaccggc
tcgggtaagacaacccagatcccgaagatctgtctcgaactcggacgtggcgtccgcggt
ctgatcggacacacacagccgcgccggttggcagcacgcaccgttgccgaacgtatcgcc
gaagaactcgacaccgaactcggcgacgccgtcggatacaccgtgcggttcaccgaccag
gtctcggaccgcacctacgtcaagctcatgaccgacggcattctactcgccgaaattcag
cgcgaccgtatgctccgacgctacgacacgctgatcatcgacgaagcgcacgaacgcagt
ctcaacatcgacttcatcctcggttacctggctcagctgctcccccgccgacccgatctc
aaggtcatcatcacgtcggcgaccatcgatcccgagcgcttcgccaagcacttcgctgtc
gacggtaagcccgcgccgatcgtcgaggtatccgggcgtacattccctgtcgaaatgcgt
taccggccactgaccgtcgaatccggcgacatcaccttcgaccgcgatcccgtcgacgcg
gtctgcgaggcggtcgacgagctgagcgcggagggcgaaggcgacatcttggtcttcctc
tccggcgaacgcgaaattcgcgacaccgcagatgctttacgcgatcggcgtcttcgcaac
accgaaatcgtcccgctgtacgcgcggctgtctgccgccgagcaacacaaagtgttctcg
ccgcacaccggccgacgcgtcgtccttgccaccaacgtggccgagacctcgctgaccgtt
cccggcattcggtacgtcgtcgatccgggaaccgcgcgcatttcgcgatattcggtgcgc
accaaggttcagcggttgccgatcgagcccatttcgcaggcgtcagctcgtcagcgttcc
gggcgttgcggccgcgtcgccgaaggaatctgcatccgcctgtattccgaggaggacttc
gagtcacgtccggcattcaccgaaccggagatcctgcgaaccaacctcgcatccgtgatc
ttgcagatgacggccctcggcctgggcgacatcgcggcattccccttcgtcgaaccgccg
gaccagcgcgccgtgaaggacggaatcggactcctcgaagaactcggcgccatcgcgcga
ggttccgaggccagccaccccgaactgacgccggtcggccgcgagctggcccagattccg
gtggatccgcggatggcacggatgctggtggaagccaagaacaacggttgccttcacgaa
acccttgtcatcgtcgcggcgttgtccatccaggacgttcgcgagcggcccgccgagttc
cagcaagccgccgacgaaaagcacgcccgcttcaacgtcgagaactccgacttcctggcc
tacctgaaactgtgggactacttacgcgaacaacgtaacgatctgtcctccaaccagttt
cgcaagatgtgccggaacgagttcctgcactggctccgcatccgcgaatggcaggacctg
cacgggcaactccggcagatcacccgcggtctcggctggacagtgggagagacaccggca
agcgagaacgcgatccatcagtcgctccttgccggattgctctcgcatatcgggctacgc
gagggcgagaagcgggactacctcggcgccaggggcagccacttcgcgatcttccccgga
tcgggactgttcaagaagccaccacgctgggtcatggccgccgaactcgtggaaacgtcg
aggctgtgggcgcgcatgtccgcgcgtatcgaacccgagtgggctgaaaagctcgccccg
cacctggtgaaacggacctattccgaaccgcactggtcctccaagcgcggctcggcgatg
gcatacgagcgggtcactctctacggagttcctctggtaaccggccgcgcagtgacgtac
tcacgaatcgatcccgaggcctctcgcgatctcttcatccgccatgcgctcgtgcagggc
gaatggcagacgaaccacaagttcttccacgaaaaccgtgcactcctcgacaacgtcgaa
gaactcgagaaccgcgcgcgccgacgcgacatcctcgtcgacgacgaaactctctacgag
ttctacgacgaacgggtcggccaggaagcggtgtccgccaggcacttcgaccagtggtgg
aagggtgagcggcgcaagaaccccagtctgctgacgttcacgccggaaaccgtggtcaac
tccgacgcggctgccgtcctgggcggcgagtacccagacgcttggcgccagggcgacatg
cagtttccgctcacttaccaattcgagccgggaaaagacgacgacggcgtcagcgcgcac
atcccggtcggcctgctcgcgcaacttcagccggtcggcttcgactggttggtccccggt
atgcgcgtcgatctcgttaccgctctgatcaagacgttgcccaagaacattcgacgcgct
gtcgttccggctccggattatgccgccgcagcattggcagcagtcaaacctcgatccgag
ccgttgatgaccgcaatggcccgcgaactctcgcacttgggcgggatccagatcgacgcc
aaggacttcgatcccgccgcgctgcccgaccatcttcggatgacatttgtcgtcgaggac
gaatcgggcaaggttctcgcgaagggtaaggatctggcgcagctacgacgcacgctcgcc
ccgcgcgtgcagaaggaagtggccaaggcggcaaccggaaccgaacgggcagcggcaacc
gtctggacatccgaaacgctgggcgcattggaacagaccatcactcgctccatcggcgga
cagcaggtgaccggctacccagctctggtgccggagaacggcggagttgccgttcgtgtc
ctgagtacgccggccgcgcaggcgcaggcgatgagggaaggtacgcgggcgcttctcctc
gcggccgttcccacccaactcaaggcagtgaccgccggcttgtcgaacacgcagcgtctg
gctctcggccagaatccggacggcggcttggaggccctcgtcgaagattgccgggtggca
gctgccaacgaagtgatcgcggctcacggtggaccggtacgcacgcctgaagcgttcgat
gccctggtgaagatcgcacgctccgaactggccggacgcgtttccgcgatcctgcgcatg
attgttccgatcctcgaacaagcacaccgactgagcgtcgtgctggaccgctcgcgcggc
gaggcagccgacgacgtccgagaacagttgacctcactgctgtttccgggatttgtcgcc
gaactgggatcggcccgcctacgcgatttaccgcggtatcttgccgcagcaaaattccgt
ctcgaagctctgcccgcaagtgcacaacgagatcagcaggctatggatgtcctcgaccgg
gtgtacgcagcgtacgaccggttgttgagttcgcttcccgaagagcgtcgcactgctcga
gatgtcgatgcgatcagttggatgatcgaggaactgcgcgtgagcctgtttgcgcagtcc
ctcggtacacccacaccgatttccgaaaagcgagtcctgaaagctatcgaagcgatcaag
cgttga
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