KEGG   Rhodococcus sp. 008: AOT96_26670
Entry
AOT96_26670       CDS       T05462                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
rhod  Rhodococcus sp. 008
Pathway
rhod03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rhod00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AOT96_26670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhod03400]
    AOT96_26670
DNA repair and recombination proteins [BR:rhod03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AOT96_26670
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      AOT96_26670
SSDB
Motif
Pfam: UvrA_DNA-bind UvrA_inter ABC_tran AAA_29 SMC_N AAA_21 RsgA_GTPase AAA_16 AAA_25 nSTAND1 AAA_22 NACHT DnaJ_CXXCXGXG Viral_helicase1 ScfRs CCDC24 NTPase_1 ThiI cobW
Other DBs
NCBI-ProteinID: ANQ74023
LinkDB
Position
complement(5754837..5757812)
AA seq 991 aa
MKGIGVADRLIVRGAREHNLRGVDLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYV
ESLSAYARQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLYAR
AGSAHCPVCGEKIARQTPQQIVDQVLEMEEGIKFQVLAPVVRTRKGEFVDLFDQLNTQGY
SRVRVDGVVHSLADPPKLKKQEKHDIEVVVDRLQVKASSKQRLTDSVETALRLAEGIVVL
DFVDREENAPDRERRFSEKLACPNGHALAIDDLEPRSFSFNSPYGACPECTGLGIRKEVD
PDLVVPDPDLSLEDGAIAPWSMGQSSEYFGRLLSGLGDILGFDMKTPWNKLPAKARKAIL
EGSEEQVHVRYKNRYGRTRSYYAEFEGVMPFLHRRLEQTESDQMKERYDGYMRDTPCPAC
GGARLRPEILSVTIAAGDFGSKSIAEVCELSISDCADFLNSLTLGSREEAIAGQVLKEVQ
ARLGFLLDVGLEYLSLSRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDN
RRLIETLTRLRDLGNTLIVVEHDEDTIRTSDWVVDIGPYAGEHGGKVVHSGPYEELLTCE
ESLTGAYLSGRSFIEVPAIRRPVDRKRQVTVVGAREHNLDGIDVSFPLGVLTAVTGVSGS
GKSTLVNDILATVMANKLNGARQVPGRHTRINGLDQLDKLVQVDQSPIGRTPRSNAATYT
GVFDKIRTLFAATTEAKVRGYQPGRFSFNVKGGRCEACSGDGTLKIEMNFLPDVYVPCEV
CHGARYNRETLEVHYKGKSIAEVLDMPIEEAAEFFQPVTSIHRYLKTLVDVGLGYVRLGQ
PAPTLSGGEAQRVKLAAELQKRSTGRTVYILDEPTTGLHFEDIRKLLIVINGLVDKGNSV
IVIEHNLDVIKTSDWVVDMGPEGGSGGGTVVAQGTPEDVAAVPESYTGKFLSEVLTAQHA
PVKAKPITKKRATKAVAAKKAAPRKKAASVS
NT seq 2976 nt   +upstreamnt  +downstreamnt
atgaagggaattggtgtggcggatcgcctgatcgtgcggggtgcgcgtgagcacaatctg
cgaggagtcgatctcgacctcccgcgagacagcctgatcgtcttcaccgggttgtccggc
tccggcaagtccagcctcgcgttcgacacgatcttcgccgaaggtcagcgccgctacgtc
gagtcgctctcggcatacgcgcgtcagttcctcggtcagatggacaagccggatgtggac
ttcatcgagggattgtctcctgcggtgtcgatcgaccagaagtcgaccaaccgcaacccc
cgttcgacggtgggcaccattaccgaggtctacgactacctccgacttctctatgcccgc
gcaggttcggcgcactgcccggtgtgtggtgagaagatcgcacgtcagacgccccagcag
atcgtcgaccaggtgctcgagatggaagagggcatcaagttccaggtcctcgcaccggta
gtccgtactcgtaagggcgagttcgtcgaccttttcgatcagctcaatacccagggctac
tcgcgagtgcgcgtcgacggtgtcgtccattcgctggcggatccgccgaagctcaagaag
caggaaaagcacgacatcgaagtagtggtcgaccgattgcaggtcaaggcgagttcgaag
cagcgcctgaccgactcggtcgagaccgcacttcgcttggctgaaggcatcgtggtcctc
gacttcgtcgaccgtgaagaaaatgcacctgatcgtgagcgtcgtttctccgagaagctg
gcctgcccgaatggccacgcactcgcgatcgacgatctcgaaccgcgctcgttctccttc
aactcgccctacggcgcctgcccggaatgcaccggcctcggtatccgcaaggaggtcgac
ccggatctggtggttcccgatcccgacctgagtctcgaagacggagcgatcgcgccgtgg
tcgatgggccagagttcggagtacttcggacggttgctctccggcctcggcgacatcctc
ggtttcgacatgaagacgccgtggaacaagttgccggcgaaggcccgcaaagcaatcctc
gaaggcagcgaggagcaggttcacgtccggtacaagaatcggtacggccgtacccgttct
tactacgcggagttcgaaggtgtgatgccgttcctgcatcgccggctcgagcagaccgaa
tcggatcagatgaaggaacggtacgacgggtacatgcgcgacacgccgtgcccggcgtgt
ggtggtgctcgcctgcgcccggaaatcctgtcggtaactatcgcggctggagacttcggc
agtaagtccatcgccgaggtctgtgaactgtcgatctccgattgcgcggacttcttgaac
agcctcactctcggttcgcgcgaagaggcgattgcgggtcaggtcctcaaggaagttcag
gcacgactcgggttcctgctcgacgtcggcttggaatacctttccctctcgcgtgccgct
ggcacgttgtccggtggcgaggcccagcgaatccgcttggcaacgcagatcggttccgga
ctcgtcggcgtgctgtatgtactcgacgagccgtccatcggcctgcatcagcgtgacaat
cgacgactgatcgaaaccctgacgcgcttgcgcgacctcggcaacacgctgatcgtcgtc
gagcacgacgaagacactatccgcacgtccgactgggtagtcgacatcggaccgtacgcc
ggcgagcacggcggcaaggtcgtccacagcgggccatacgaagaactgctgacgtgtgaa
gaatctctgaccggcgcctacctgtcaggtcgtagcttcatcgaggttccggccattcgt
cgaccggtggaccgcaaacgccaggtcacggtcgtcggagctcgcgagcacaatctcgac
ggcatcgacgtgagtttcccgctgggtgttctcaccgctgtcaccggtgtctccggttcg
ggcaagtcgacgttggtcaacgacattctcgcgaccgtcatggcgaacaagctcaacggt
gcacgccaggtacctgggcgtcacacacgaatcaacggtctcgatcagctggacaagctc
gtgcaggtcgatcagtctccgatcggccggactccacgatcgaacgcggcgacgtacacc
ggcgtgttcgacaagatccgaaccctgttcgcggccaccacggaagcgaaagtccgcggt
taccagcccggccgattctcgttcaacgtcaagggcggacgctgcgaggcgtgctccggc
gacggaacgctgaagatcgagatgaacttcctgccggatgtgtacgtgccctgcgaggtg
tgccacggcgcccggtacaaccgcgaaacgctcgaggtccactacaagggcaagtcgatc
gccgaggtactcgacatgcctatcgaggaagcagccgagttcttccagccggtcacctca
attcaccggtacctcaagacgctggtcgacgtcggcctgggctatgtccgactgggtcag
ccggctccgactctgtccggtggtgaagcgcagcgcgtcaagctcgccgccgaattgcag
aagcggtccaccggtcgcacggtgtacatcctcgacgagcccaccacgggtctgcatttc
gaggacatccgcaagctcctgatcgtgatcaacggtctggtggacaagggcaacagcgtg
atcgtgatcgagcacaatctcgacgtgatcaagacgtcggactgggtcgtcgacatggga
cccgagggtggatccggcggcggaaccgttgtggcgcaaggtacgccggaagacgttgcc
gcggtccccgagagctacacgggcaagttcctcagtgaggttctcaccgcacagcacgcg
ccggtcaaggccaagccgatcaccaagaagcgtgcgacgaaggcagttgccgcaaagaag
gccgcgccacggaagaaagccgcttccgtgagctag

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