Rhodococcus sp. 008: AOT96_29340
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Entry
AOT96_29340 CDS
T05462
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhod
Rhodococcus sp. 008
Pathway
rhod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOT96_29340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhod03019
]
AOT96_29340
03009 Ribosome biogenesis [BR:
rhod03009
]
AOT96_29340
Enzymes [BR:
rhod01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AOT96_29340
Messenger RNA biogenesis [BR:
rhod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AOT96_29340
Ribosome biogenesis [BR:
rhod03009
]
Prokaryotic type
rRNA processing factors
AOT96_29340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ANQ74467
LinkDB
All DBs
Position
complement(6346674..6349919)
Genome browser
AA seq
1081 aa
AA seq
DB search
MADQSPTESDSSTTPEFPDKMRVHALAKLLGVTSKQVLAEAAALGTELRSAQSSLHRDVA
QRIHASLTSAAEAIEPVVAELDTLIDPVVEAPVADEPAAEAPVEAPVAEAPAEKPVRARR
TRKKVVVEEPAAEETVDPAVAEISAGLDAAAALQSKEAEQSDLFTSFEAPQTHQPEVAPA
APQVPLFLQPDLEAAEVAPRRRRARREPAAPAVVEEKQTTAEAETVVPEAAPVAVPAVEE
PAVTAPQTEGESAESEDEDDDQPRRRRRGRRGRGRGRGEQGGEQGSDEESDTATESEQES
APAAVEKQTDDAAGEESGDKSESTADADSENADDSDLDADGSSRRRRRRRRRKTGTDGAT
DATATSEDDPPNTVVHEREPRNKTRVKDEVQGISGSTRLEAKRQRRRDGRDAGRRRPPIL
TESEFLARREAVDRVMVVRDRADSGQPHATTQVAVLEDGVLVEHFVTNSASASMVGNVYL
GRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSRKIEQALKPGDQVLVQVSK
DPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKEILRDIVPADAGVII
RTASEGVSEEELARDVTRLQAQWAGIEEQAAAADTGKSGNPQALYEEPDMLVKVIRDLFN
EDFSKLVIEGEKAHTTVENYINSVAPDLLPRLEKYTPNNGIDVFAARRIDEQLAKALDRK
VWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGG
MIVVDFIDMVLESNRDLVLRRLTECLGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFS
TTCEHCHGRGIIVHSEPVEVKSSDDGGSRSGSQRSDSGTSRKNKRGRGDKSASTESNRQE
APAPEVPAVDATVKRAHPVALAMASHHHDDDETVAADSTESDSAGVSSGDDASKSADRQQ
DRPIDTPAAAEHHDVPVVDSAAEEVSAVDNESAAASTEAAPRGRRRSRRASRAASAPVAE
AAPEVGTVFVIPTPEPVVDAVAENVPAPATEVPAEEEVVVVKRPRRRRAAARPAGPPVDG
E
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaatccccaaccgaatcagattccagcaccaccccggaatttcccgacaag
atgcgcgtacacgcgctggcgaagctgctcggcgtcaccagcaagcaggtccttgccgaa
gccgcagcgctcggtaccgaattgcgcagcgcgcagtcgagtctccaccgtgacgtcgct
cagcggattcatgcctcgttgacttccgcggccgaggccatcgagcccgtcgtcgccgag
ctcgacaccctcatcgacccggttgtcgaggcgccggttgccgacgagcctgctgcagaa
gctcccgtggaggctcctgttgcagaggctccggccgagaagcctgtcagggctcgtcgc
actcgcaaaaaggtcgtcgtcgaagaacctgcagcagaagaaacagtggatccggctgtc
gccgagatcagcgctggactcgacgccgcagctgcgctgcagagcaaggaagccgagcag
tccgatctgttcacttccttcgaggcaccgcagacccatcagcccgaggtggctcccgcc
gcgccgcaggtcccgctgttcctgcagccggatctcgaagccgccgaggtagctccgcgt
cgccgtcgcgcacgccgcgagcctgctgcaccggcggtcgtcgaagagaagcagacaacc
gcggaagccgaaaccgtcgttcccgaggcagcgccggttgcagttcctgccgtcgaagag
ccggctgtgaccgcaccgcaaaccgagggcgagagcgccgagtccgaggacgaggacgac
gatcagccgcgtcgccgtcgtcgtggacgccgtggacgtggacgtggtcgcggtgaacag
ggtggcgagcagggttcggacgaagagtcggataccgctaccgaatcggagcaggaatct
gcccctgcggcagtcgagaagcaaaccgacgacgctgccggcgaagaatccggtgataag
tccgagtccaccgctgatgcggattccgagaatgccgacgattccgatctcgatgccgac
ggatcgagccgccgtcgccgtcgtcgtcgtcgtcgcaagaccggcaccgacggcgccacc
gacgcgactgcgacgtccgaggacgatccgccgaacaccgtcgttcacgagcgcgagccg
cgcaacaagacccgcgtcaaggacgaggtccagggcatcagtggttcgacacgtctggaa
gcgaagcgtcagcgtcgccgcgacggtcgtgacgccggtcgtcgtcgtccgccgattctg
accgagtcggagttcctcgcgcgtcgtgaggccgtcgatcgcgtcatggtcgtgcgcgat
cgggcagacagcggtcagccgcatgcgactacacaggtagcagtcctcgaagacggagtg
ctggtcgagcacttcgtcaccaactcggcgtccgcgtcgatggtcggcaacgtgtacctc
ggacgtgtccagaacgtgctccccagcatggaagctgcgttcatcgacatcggacgtggc
cgcaacggtgttctctacgccggtgaggtcaactgggaggctgccggtctcggtggcaac
tcgcgcaagatcgagcaggctctcaagcctggcgatcaggtgctcgttcaggtcagcaag
gatccggtcggccacaagggtgctcgactgacgacacagatttcgcttgccggtcgtttc
ctcgtctacgtgcctggtggtacgtccacgggtatcagccgcaagcttccggacaccgag
cgcaagcgtctcaaggaaatcttgcgcgacatcgtgcccgccgacgcgggcgtgatcatt
cgcacggcgtccgagggggtcagcgaagaagagttggcgcgcgacgtgactcgtctgcag
gctcagtgggccggcatcgaggagcaggccgcggctgcggacaccggcaagtccggcaac
ccgcaggcgttgtacgaagagcctgacatgctggtcaaggtcattcgtgatctgttcaac
gaggacttctccaagctggtcatcgagggcgagaaggcgcacacgacggtcgagaactac
atcaactccgttgcgcccgacctgcttccgcggctcgagaagtacacgccgaacaacggt
atcgacgtcttcgcggctcgccgtatcgacgagcagttggccaaggcactcgatcgcaag
gtgtggctgccgtccggcggcaccctggtgatcgaccgcaccgaggccatgaccgtcgtc
gacgtcaacaccggcaagttcaccggagccggcggaaacctcgaagagaccgtcacccgt
aacaacctcgaagcggccgaggagatcgttcgccagatgcgcctgcgggacatcggcgga
atgatcgtcgtcgacttcatcgacatggttctcgaatcgaaccgggacctggtcctgcgt
cggctcaccgaatgcctgggtcgcgatcgcacgcgccatcaggtgtcggaggtcacgtca
ctcgggctcgtgcagatgacgcgcaagaagttgggcaccggattggtcgaggccttctcg
accacctgtgagcactgccacggccgcggcatcatcgtccattccgagcccgtcgaggtg
aagtcctcggacgacggaggatcgcgttcgggctcgcagcgcagtgattccggtacctcg
cgcaagaacaagcgtggccgcggagacaagtcggcttcgaccgagtccaacagacaggaa
gctccggcgccggaggttccggccgtcgacgcgacggtcaagcgggctcatccggtggca
ttggcgatggcctcgcatcaccacgacgacgacgagaccgtcgcggccgactcgaccgag
tctgattccgccggtgtgtcttcgggggacgatgcatccaaaagtgccgatcggcaacaa
gatcggccgatcgatactcctgctgctgctgagcaccatgacgttcctgttgtggactct
gctgcggaagaagtatccgcagtggacaacgagtcggccgcagcttcgaccgaagcagct
ccgcgcggtcgtcggcgtagtcgccgggcgtcgcgggcagcgtcggcaccggttgccgag
gcagctcccgaggtgggcacggtcttcgtgattccgactccggaacccgtggtggacgcg
gtcgcggaaaacgttccggctccggccaccgaagttccggccgaggaagaagttgtcgtc
gtcaagagaccccgtcgcaggcgtgcagcagcacggcccgcaggtcctccggtagacgga
gagtaa
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