Rhodococcus sp. 008: AOT96_30075
Help
Entry
AOT96_30075 CDS
T05462
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rhod
Rhodococcus sp. 008
Pathway
rhod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOT96_30075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhod03021
]
AOT96_30075
03019 Messenger RNA biogenesis [BR:
rhod03019
]
AOT96_30075
Transcription machinery [BR:
rhod03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AOT96_30075
Messenger RNA biogenesis [BR:
rhod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AOT96_30075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
ANQ74582
LinkDB
All DBs
Position
complement(6517681..6519819)
Genome browser
AA seq
712 aa
AA seq
DB search
MTDTDLIATSAPAGSESGDNSQASSSASNGAVATSTKRAETRRGAGLSGMVLTELRTLAG
ELGIKGTSGMRKGDLIAAIKERQGGSAKAAPAQSELTLDDASVARTRAKSTRAARTETPA
AETAPAAESAPAEAAPARTESAEDSDQSAPRRGRQRRGAARRAGSPDQGELSIEQEAPSA
KSDADTAKAADSSKVAETAKAEAPAERPARTEGKSDADQAPAEQGNERPRRERNRDNQGQ
RDNQGQRENQGNRGNQDRQDRQDRQDRGNQNNAGQNNAGPRTDNRNNGPDDDEEGGRGRR
GRRFRERRGRGRDRGEGGAPNDSRETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPN
DVYVSMNLIRKNGLRRGDAITGAVRVSRDGEQGSQRQKFNPLVRIDTVNGGDVEAAKKRP
EFNKLTPLYPNQRLRLETEQHILTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANA
VATNNPECYLMVILVDERPEEVTDMQRSVKGEVISSTFDRPPGDHTAVAELAIERAKRLV
EMGKDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLT
IIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSSTRKDELLLSP
DEAAVLHKLRRVLSGLDSHQAIDLLIDRLKKSKNNLEFLMQVSKTAPGAIDD
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatacggacctcatcgccacttctgcacccgccgggtcggaatcaggcgacaat
tctcaggcgtcatcttcagcatcgaacggtgcggtggcgacctccacgaagcgtgccgaa
acgcgccgtggtgccggactctccggcatggtgctcaccgaactccgcactcttgcgggt
gaactgggcatcaaaggcacttccggcatgcgcaagggtgacctgatcgcagccatcaag
gagcgccagggcggcagcgcgaaggctgcacccgcacagagtgaactcactctcgacgac
gcatccgttgcgcgcactcgtgccaagagcactcgcgccgcacgcaccgaaacccccgca
gccgaaacagctccggcagccgagtcggctcctgccgaggccgcgcctgcgcgtacggaa
tccgccgaggattccgatcagagcgcaccccgtcgcggacgtcagcgtcgtggcgccgct
cgtcgtgcaggttcacccgaccagggcgaactgagcatcgagcaggaagcgccttcggcg
aagtccgacgcggacaccgcgaaggccgccgattcttcgaaggtcgccgagaccgccaag
gccgaggctccggccgagcgtcctgcgcgcaccgagggcaagtccgacgctgatcaggct
cccgccgagcagggcaacgagcgtccccgccgcgagcgcaaccgcgacaaccagggccag
cgcgacaaccagggccagcgcgagaaccagggcaaccggggcaaccaggatcgccaggac
cgccaggaccgccaggaccgcggcaatcagaacaacgccggccagaacaacgccggtcct
cgcacggacaaccgcaacaacgggccggacgacgacgaagagggtggacgcggacgccgc
ggacgccgtttccgcgagcgccgtggccgtggtcgtgaccgcggtgagggtggcgcaccc
aacgattcacgcgagaccgagattcgtgaggacgacgtccttcagccggtcgccggcatc
ctcgacgtcctcgacaattacgccttcgtgcgtacgtccgggtacctcgccggtcccaac
gacgtctacgtctccatgaacctgatccgcaagaacggccttcgccgtggcgacgccatc
accggtgccgtccgcgtctcgcgtgacggtgagcagggcagccagcgccagaagttcaac
ccgctggttcgcatcgacacggtcaacggcggcgacgtcgaggccgcgaagaagcgcccc
gagttcaacaagctcacgccgctgtacccgaaccagcgtctgcgcctcgagaccgagcag
cacattctcaccacgcgtgtcatcgacctggtgatgcccatcggtaagggccagcgcgcc
ctcatcgtgagcccgcccaaggcaggtaagaccagcgtgttgcaggcgatcgcgaatgcc
gtcgccaccaacaatcctgagtgctacctgatggtcatcctcgtggacgagcgtcccgag
gaagtgaccgacatgcagcgcagcgtgaagggtgaggtcatttcctccaccttcgaccgc
ccgccgggagatcacaccgcagttgccgagctggcaatcgagcgtgcgaagcgcctggtc
gagatgggtaaggacgtcgtcgtactgctcgactccatcacgcgtctgggtcgtgcgtac
aacaactcctcgccggcgtcgggacgcatcctctccggtggtgtcgactcgacggcgctc
tacccgccgaagcgtttcctcggtgctgcccgcaacatcgagaacggtggatcgctcacc
atcatcgctaccgcaatggtcgagaccggatccaccggcgacaccgtgatcttcgaagag
ttcaagggcaccggcaacgccgagctcaagctcgatcgcaagatcgccgaacgccgcgtg
ttcccggccgtggacgtcaacccgtccagcacgcgtaaggacgagttgctcctgagcccg
gacgaagctgcggtgctgcacaagctccgtcgcgtcctgtccggtctggactcgcatcag
gccatcgatctgctgatcgatcgactgaagaagagcaagaacaacctcgagttcctgatg
caggtttccaagaccgcaccgggtgcgatcgacgactga
DBGET
integrated database retrieval system
