Rhodococcus sp. 008: AOT96_33885
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Entry
AOT96_33885 CDS
T05462
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhod
Rhodococcus sp. 008
Pathway
rhod03420
Nucleotide excision repair
rhod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOT96_33885
03430 Mismatch repair
AOT96_33885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhod03400
]
AOT96_33885
Enzymes [BR:
rhod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOT96_33885
DNA repair and recombination proteins [BR:
rhod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AOT96_33885
MMR (mismatch excision repair)
Other MMR factors
AOT96_33885
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
UvrD_C
AAA_30
PhoH
Motif
Other DBs
NCBI-ProteinID:
ANQ76038
LinkDB
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Position
pR8C1:37930..39651
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AA seq
573 aa
AA seq
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MREAITFTDAQRALIEATSSTYVSACPGAGKTQAIVQRFVERPAIVPRLGIALLSFANAA
VDEAISRCAGKPELLHSPNFVGTIDAFINRFIVGPVFLQRRGIRPQFSSSWAHVTNTLVS
AKGVRLQAPLDWFTFTIDGSAVLDRAPWDKKAIVEKLTPPHREKLEDRAGQRWASYTRRG
IFDSAAARLVMALYLDLPEVQSSLVDLLSARFCEVIVDEVQDCSAEDVKLLKFLLSAGIR
LVMVGDRDQAIYGFRGSSPEALNDLVEGVAVGQRLNGNFRSSPAICSAVDSLRFGTDRDV
PVGTNASDVSPVQLVAFDKPVDLHAKIGDILDATGHLKENVVFLAHGTSTARTHAGESTL
AKPGNGKLARFAAAVHTVQDASNTNRARAEGLRRLEMIVLEFAGFSEDRDIDDYLRPRGL
TARSFRESCLRLAMTLDNPYLGTPGTFKEALKEQTASRKLLSWNLDGIPARSDAWPTRST
VTKTANYAHSTVHGYKGLQAPGVVLVIPKPSPSMADNEHGVTQWSCSEQGEARRVLYVGA
SRAEQLLIIAAHTAVHDAVAKNLTDDDVNFVQS
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
gtgagggaggccatcaccttcaccgacgctcaacgcgcgctcatcgaggcaacgtcctcc
acctatgtctctgcgtgtccaggggccggcaagacccaagcaattgtccagcggtttgtc
gagcgccccgcgatcgttcctcgcctaggtatcgcattgctgtccttcgctaacgccgca
gtcgacgaggctatctcccgatgcgcgggtaaaccggagctgttgcattcaccgaacttt
gtcggaaccatcgacgccttcatcaatcgattcattgtcggaccggtcttcctccagcgc
cggggaatcagaccacagttttctagttcctgggctcacgtcaccaatacgctggtctcg
gcgaagggtgttcggctgcaggctccactcgattggttcacattcacgatcgatggctcc
gccgtattggatcgggcaccatgggacaaaaaggcgatagtcgagaagctcaccccgccg
caccgggaaaagctcgaagacagggcaggtcagcgttgggcgagctacaccaggcgcggc
atcttcgattccgctgccgctcgtttggtgatggccttatacctagacttgcctgaggtt
cagtcctcacttgtcgatctactctcagctcggttctgcgaggtcatagtcgacgaagtc
caagactgttcagcagaggatgtgaaactcctcaaattcctgctctcggccggtatccga
ttggtcatggtcggtgacagagaccaggcgatttacggatttcgaggttcatcccccgaa
gctctcaacgatctcgtggaaggtgtcgcggtaggacaacgcctgaatgggaacttccga
agttcccccgctatctgcagcgcagtcgatagcctacgtttcggaactgaccgtgacgtg
ccagtcgggacgaacgcctccgatgtcagtccagtgcaattggtggcattcgacaagcca
gtagatcttcacgcgaagatcggcgacatcctcgacgcgacagggcatctgaaggaaaat
gttgtttttctcgcccatgggacaagcaccgctcggacgcatgctggagaatcgacacta
gcgaagccaggcaatggaaaacttgcccggttcgccgcagctgtccacacagttcaagac
gcatcaaacacgaaccgcgcacgcgcagaaggtctccgccgtctcgaaatgattgtcttg
gagttcgccggattcagcgaagaccgtgacatcgatgactacttgcgcccccgggggttg
acggcacgttcctttcgagaatcgtgcctacgcctagcaatgacccttgacaatccgtac
ctgggtacccccggcaccttcaaagaggcactgaaagaacaaacggcgtcacgaaaactg
ttgagctggaacctcgatggcataccagcaaggtccgacgcgtggccaacacgatcaaca
gtcacaaaaaccgccaactacgcgcactccacagttcacggatacaaaggcctccaggct
ccgggggtcgtgctggtgattccgaaaccgtcaccatcgatggcagacaacgagcatggc
gtcacgcaatggtcttgttccgagcagggcgaagcgcgacgggtgctctacgtcggagcg
tccagggcagaacagttgctgatcatcgccgcgcacactgcagttcacgacgcagttgca
aagaatctgaccgacgacgacgttaacttcgtccaatcctga
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