Rhodopseudomonas sp. P1: LRC39_12515
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Entry
LRC39_12515 CDS
T11217
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhoe Rhodopseudomonas sp. P1
Pathway
rhoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRC39_12515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhoe03019
]
LRC39_12515
03009 Ribosome biogenesis [BR:
rhoe03009
]
LRC39_12515
Enzymes [BR:
rhoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LRC39_12515
Messenger RNA biogenesis [BR:
rhoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LRC39_12515
Ribosome biogenesis [BR:
rhoe03009
]
Prokaryotic type
rRNA processing factors
LRC39_12515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XAT71114
LinkDB
All DBs
Position
complement(2698409..2701579)
Genome browser
AA seq
1056 aa
AA seq
DB search
MANKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESEQRSSRRRSRHRSHRR
RNNGERVQSEIVETVADVAAEQPHEAADHHEAHEVEAHAEGERLMHELPEGETAEQHNAA
HASADHEPPHVEAAPSEAPAPSEPEVSAAAEPVANEQPAVAEAPAPVEAPQAAASHDETH
AHDDDHAEEGAGYAEDAPFPIDDHHEADDLHEAHDDHVQAEHEVETDSEAEAEDDEEEDD
EEEAEEDVVESVGGDDVLEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAAL
TTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGASR
TKPEIKRDFEYLIRMWETVRDVTLNSQAPKLVYEEGSLIKRSLRDLYNKEIDEVLVAGEA
GYREARDFMHMLMPSQVRAVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQT
EALVSIDVNSGRSTREHHIEDTALKTNMEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNN
RAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSV
SSVALQLLRGLEEVLMKGATHNLIVRTRTDVALYVLNHKRGHLRDLETGFRVSLSVLADP
TVSGQQSFVIDRGEQVHTLETAKALLAAQIAASPAPLDEPEDDDGYDFEAEIETDETVGL
AEDQGSEAGESEGEGRKRRRRRRRRRSGEPRDAAEAGAVGEDGEQPFVTEGVEQVGEADE
GDEAGEDDGETEVRADQGENGERRPRRRGRRGGRRRRGTADGTETEAGVVGSISDELNAT
DEAESADAVADFDGGSPSVQPSFEPAAETEQRHHAAPQDTAPSEPQHTAAAAAALDSGDA
SAEDDSAAKKAARRRSTVREKVSFGAQAASDTTTEAAADVRPEPTTEAEQPVAAAPTTEA
PAAEAATQAAEQPAQEPSSTAPRRVGWWSRRFGGGN
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaagatgctgatcgacgccacccacccggaagagacccgggtggtcgtggtc
cgtggcaaccgcgtcgaagagtttgatttcgaaaccgcccagcgcaaacaactccgcggc
aacatctatctcgcaaaagtcacccgggtcgaaccctcgctgcaagccgccttcatcgaa
tatggcggcaatcgccacggcttcctcgccttcagcgaaatccatcccgactattatcaa
atcccggtcgccgaccggcaggctctgatcgaagccgacgaacgcgcccaccgcgaagcc
gaagaagaaagcgagcagcgctccagccgccgccggtcgcggcatcgcagccatcgccgc
cgcaacaacggcgaacgggtgcagagcgagattgtcgaaaccgttgccgacgttgcggcc
gagcagccgcacgaggctgccgaccatcacgaggcgcacgaggtcgaggcacacgccgag
ggcgagcgcctgatgcacgagctgccggagggagagaccgccgagcagcacaacgccgcg
cacgcctccgccgatcacgagcccccccacgttgaagccgcgccgtccgaagcccccgct
ccgtccgagcctgaggtgagcgcagcagccgagcccgtcgcgaacgagcagccggcggtt
gccgaagctcccgcgccggtcgaagccccgcaggccgcggcgtcgcacgacgagacccac
gcgcacgacgacgaccacgccgaggaaggcgccggctacgccgaagacgcgccgttcccg
atcgacgatcaccacgaggccgacgacctccacgaggcgcacgatgatcacgtgcaagcc
gagcacgaggtcgaaaccgactccgaggcggaagccgaggatgacgaggaagaggacgac
gaagaggaagccgaagaggacgtcgtcgagtccgtcggcggtgacgacgtgctcgaggaa
gtgccggaacgcgccttccgtccgcgtcggcagtacaagatccaggaagtcatcaagcgc
cgccaggtgatgctggtgcaggtcgtcaaggaagagcgcggcaacaagggtgcggcgctc
accacctacctgtcgctcgccggccgctacgccgtcttgatgccgaacaccgcccgcggc
ggcggcatcagccgcaagatcacctcggcccaggatcgttcgcggctgaaggaagtggtg
caggacctcgacgtgccggaaggcatgggcgtgatcctgcgcaccgccggcgcctcacgg
accaagcccgagatcaagcgcgacttcgaatacctgatccggatgtgggagacggtgcgc
gacgtcacgctgaactcgcaggcgccgaagctggtctatgaagaaggctcgctgatcaag
cgctcgctgcgcgatctctacaacaaggagatcgatgaagtgctggtggccggcgaagcc
ggctatcgcgaagcccgcgacttcatgcacatgctgatgccgtcgcaggtccgcgcggtg
aagctgtatcgcgacggccagccgctgttctcgcggatgggcgtcgagagccagctcgac
gcgatgttctcgccgaccgtgcagcttcgctccggcggctacatcgtcatcaaccagacc
gaagcgctggtctcgatcgacgtcaactcgggtcgctcgacccgcgagcaccacatcgag
gacaccgcgctcaagaccaacatggaggccgccgaagaagtcgcccggcagctccggctg
cgcgacctcgccggcctgatcgtcatcgacttcatcgacatggacgagaagcgcaacaac
cgcgcagtcgagcgcaagctcagcgactgcctgcggcaggaccgcgcccgcatccaggtc
ggccgcatttcgcatttcggcctgctcgaaatgtcgcgccagcgtatccgcgccagcgtg
ctggaaagctcgaccgagccctgcccgcattgcggcggctcgggccacgtccgctcggtg
tcctcggttgcgctgcagctgctgcgcggcctcgaagaagtgctgatgaagggcgccacg
cacaatctgatcgtgcgcacccgcaccgacgtggcgctgtacgtgctcaaccacaagcgc
ggccatctgcgcgacctcgagaccggcttccgggtgtcgctgtcggtactggcggatccg
accgtcagcggccaacagtcgttcgtgatcgaccgcggcgaacaggtccacacgctggag
accgccaaggcgctgctcgcggcgcagatcgccgcctccccggcgccgctcgacgagccc
gaggatgacgacggctacgatttcgaagccgagatcgagaccgacgagaccgtcggcctc
gccgaggatcagggcagcgaagccggcgagagcgaaggcgaaggccgcaagcgtcgtcgg
cgccgccgtcgtcggcggtcgggcgagccgcgtgacgccgccgaggccggtgcagtgggc
gaagacggcgagcaaccgttcgtgaccgaaggtgtcgaacaggtcggcgaagctgacgaa
ggcgacgaggccggcgaagacgacggcgagaccgaagtccgcgccgaccagggcgagaac
ggcgaacgccgtccgcgccgccgcggtcgtcgtggtggccgccgccgccgtggcactgcg
gatggcactgagacagaggcaggcgtggtcggctcgatcagcgacgaactaaacgcaacc
gacgaagccgaatccgccgatgcggtcgccgacttcgacggcggcagcccgtcggtgcag
ccgagcttcgaaccggcagccgagaccgaacagcggcatcacgccgcgccgcaggacact
gcgccgtccgaaccgcagcacacggcagcagcagccgccgcactcgacagcggcgacgca
tccgccgaagacgacagcgccgcgaagaaggctgcgcgtcgccgctccacggttcgcgaa
aaggtgagcttcggcgcacaggccgcctccgacacgacgacggaagccgcggccgacgtg
cggcccgagccgaccactgaggccgagcagcccgtagcagccgcgcctacgacagaagcc
ccggccgccgaggcagcaacgcaagcagccgagcagcccgcgcaggagccctcctccacc
gccccgcgccgggtcggctggtggtcccgccggttcggcggcggcaattaa
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