Rhodopseudomonas sp. P1: LRC39_12805
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Entry
LRC39_12805 CDS
T11217
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rhoe Rhodopseudomonas sp. P1
Pathway
rhoe03410
Base excision repair
rhoe03430
Mismatch repair
rhoe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LRC39_12805 (recJ)
03430 Mismatch repair
LRC39_12805 (recJ)
03440 Homologous recombination
LRC39_12805 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhoe03400
]
LRC39_12805 (recJ)
DNA repair and recombination proteins [BR:
rhoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LRC39_12805 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LRC39_12805 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LRC39_12805 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
ATPgrasp_N
Motif
Other DBs
NCBI-ProteinID:
XAT71169
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All DBs
Position
2766189..2768030
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AA seq
613 aa
AA seq
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MTPPISVLPAETVPAFLGVTRSATGKAWRDRLDARATAKAQAMVQRYQLPEMLARVLAGR
GVEIDQVEDFLDPTIRKLMPDPASLTQMEAGAKRIADAASRGEKVAIFGDYDVDGATSSA
LLAWHLRHCGLDPLIHIPDRIFEGYGPNIDAIRMLAGKGATLLITVDCGTTSLEPLAEAR
RLGMSVVVIDHHQCGDELPEVEALINPNRPDDLSGLGHLAAVGLVLMTLVAVNRELRHRG
FWTTERPEPNLLDMLHHVALGTVADVAPLVGLNRAFVAKGLIAMRRRDHVGHTALMDVSR
LNGPPEAWHLGFMLGPRINAGGRIGRADLGVRLLLESDVSEAARIAAELDRLNSERREIE
QRAEAQAEAEAMASLGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPSFAIALEPGG
IGTGSGRSISGVDLGKAVRQAVHDGLLLKGGGHAMAAGVTLRKERLAEFRAWLETTLADD
VAKSRHVNELYVDGAVSARGVTTELAATLNRAGPFGAGNPEPIVALPAHQLVYADEVGQA
HLRLRFKAGDGAFVNGIAFRSVGQKLGNALTENRGQTLHVAGCLSVDRWQGAERVQLRVI
DVAVPDAGPTMIR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgacgcctcccatctccgttttgcccgccgaaaccgtgccggcgtttctcggcgtgacc
cgctctgccaccggcaaggcgtggcgcgaccggctcgacgcgcgcgccactgcgaaagcg
caggcgatggtgcagcgctatcaattgcccgagatgctggcgcgggtgctggccgggcgg
ggcgtggagatcgaccaggtcgaggactttctcgatccgacgatccgcaagctgatgcca
gatccggcgtcgctgacccagatggaagccggtgccaagcggattgccgatgccgcctcg
cgcggcgagaaggtcgcgatcttcggcgattacgatgtcgacggcgccacctcgtcggcc
ttgctcgcctggcatctgcgccattgcggcctcgatccattgatccacattccggatcgc
attttcgaaggctacggcccgaatatcgacgcgatccgcatgctcgccggcaaaggcgcg
acgctgctgatcacagtcgattgcggcaccaccagcctggagccgctggcggaagcacgg
cggctggggatgagcgtcgtggtgatcgatcatcaccaatgcggcgacgagctgcccgag
gtcgaagcgctgatcaatccgaaccggcccgacgatctgtcggggctcggccatcttgcc
gcggtcggcttggtgctgatgacgctggtcgcagtcaatcgcgagctgcggcatcgcggg
ttctggaccaccgagcggccggagccgaacctgctcgacatgctgcaccacgtcgcgctt
ggcaccgtggcggacgtcgcgccactggtcgggctcaaccgtgctttcgtcgccaagggc
ctgatcgcgatgcgccgccgcgatcacgtcggtcacaccgcgctgatggacgtgtcgcgg
ctgaacggtccgccggaggcgtggcatctcggcttcatgctggggccgcggatcaatgcc
ggcgggcgtatcggccgcgccgatctcggcgtccggctgttgcttgaatccgacgtctct
gaagccgcccgcatcgccgccgaactcgatcgcctcaacagcgaacggcgcgagatcgaa
cagagggccgaagcccaggcggaagccgaggcgatggcgtcgctcgggctggaggacaag
ggcgcggtgatcgtcactgcgtccgaaggctggcacccgggcgtggtcggcctggtcgcg
tcgcggctgaaagagaagttcggacggccgtcgtttgcgatcgcgctcgagccgggcggc
atcggcaccggctcgggccgttcgatctccggcgtcgatctcggcaaggcagtgcgccag
gcggtgcacgacgggctgctgctcaagggcggcggccacgccatggcggccggcgtgacg
ctgcgcaaagagcggctcgccgaattccgggcctggctggagacgacgctggcggacgac
gtcgccaagtcgcgccacgtcaacgaactgtacgtcgacggcgcggtgtcggcgcgcggc
gtcacgacagagctggcagcgacgctgaaccgggcagggccgttcggcgccggcaatccg
gagccgatcgtggcgctgccggcgcatcagctcgtctatgccgacgaggtcggccaggcg
catctgcggctgcgcttcaaggcgggcgacggcgcgttcgtcaacggcatcgcattccgc
agcgtcggccagaagctcggcaacgcgctgaccgaaaaccgtggtcagacgctccacgtc
gccggctgcctaagtgtcgaccgctggcaaggcgccgaacgcgtgcaactccgcgtcatc
gacgtcgcggtcccggatgccgggccgacgatgatcaggtga
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