Rhodopseudomonas sp. P1: LRC39_13380
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Entry
LRC39_13380 CDS
T11217
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhoe Rhodopseudomonas sp. P1
Pathway
rhoe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LRC39_13380 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhoe03400
]
LRC39_13380 (mfd)
Enzymes [BR:
rhoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRC39_13380 (mfd)
DNA repair and recombination proteins [BR:
rhoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LRC39_13380 (mfd)
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NCBI-ProteinID:
XAT71273
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Position
2894626..2898144
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AA seq
1172 aa
AA seq
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MKTPSRSPAEQLTPGKALTFANVAEGAEGLIIADLARAVAAKPKAPAVSLTVICRDGPRM
QQLARSLEFFAPDLEVLQFPAWDCQPYDRVSPHAGILAQRVTTLAKLSRLTGSDKPLIVL
TTVNAAVQRVPVREIIAAQALSVAPGNVVPMDSIVAWLEHNGYSRASTVREAGEYAVRGG
ILDLFPAGLDQPVRFDFFGDQLESIRTFDAETQRTLHTMRGLDLVPVSEFQLVTETIRRF
RMGYVAAFGAPHPDDQLYAAVSEGRRHPGMEHWLPLFQERMDTLFEYLKGTPVAIEPQSE
DAARERFKQIADYYDARREAMEQPGSGAIYKPLPPDRLYLTDSEWTARLEGVALARLTPF
ALPDDTNDVIDAGARAGRNFAPERADANVNVFETLVAHVYALQAARKKVVIALWSEGSRD
RMASMLKDHKLVALTSVNSWRTVQATPRNETMLAVVGLESGFETDAFAVITEQDVLGDRL
VRQRKASKKLDNFISEVTSLSTGDIVVHVEHGIGRFVGLQTLEVGGAPHDCVELHYANDT
KLFLPVENIELLSRYGSDGTAVELDKLGGSGWQARKAKLKNRIRQIAGELIKVAAERHLR
EAPKLPVQPQLYDEFCARFPYDETEDQLAAINAALSDLEKGTPMDRLVCGDVGFGKTEVA
LRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFRGFPVNVGQASRLVSTKELSQVKKG
IADGTLDIVVGTHALLGKSIKFKDLGLVIVDEEQHFGVTHKEKLKQLRSEVHVLTLSATP
IPRTLQLAMTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IDDLAEVKDFLDKHVPEMKVAVAHGQMPPAVIEDIMSAFYDGKFDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPQHNITAQAERRLKVLQSLETL
GAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAITNLKAGIVDEPVADRW
SPQITIGMPVLIPEDFVADLAVRLSLYRRLADLDTDEEIENFAAELRDRFGPLPDEVRYL
FKVAAIKAYCRRANVEKVDAGPKGVVISFRDNAFAQPDKLVFFIKRHGEAAKVRPDMKVV
FFQVWETPEERLMGTTDILKQLADLAENRKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagactccgagcaggtcgccggcggaacagcttacgcccggcaaggcgctgaccttc
gccaacgtcgccgaaggcgccgaggggctgatcatcgccgatctggcccgcgcggtcgcg
gccaagccgaaggcgcccgctgtcagcctgacggtgatctgccgcgatggtccgcggatg
cagcagctcgcgcgcagcctggagttcttcgcgcccgatctcgaggtgctgcagtttccg
gcctgggactgccagccttatgaccgcgtttcgccgcacgccggcatcctggcgcagcgt
gtcaccaccctggcgaagctgtcgcgcctgaccggcagcgacaagccgctgatcgtgctg
accacggtcaacgccgccgtgcagcgggtgccggtgcgcgagatcatcgccgcgcaggcg
ctgtcggtggctcccggcaacgtggtgccgatggattcgatcgtcgcctggctcgaacac
aacggctacagccgcgcctccacggtgcgcgaagccggtgaatacgcggtccgcggcggc
attctcgatctgtttccggccggcctcgaccagccggtgcgattcgacttcttcggcgac
cagctcgaatcgatccgcaccttcgacgccgagacccagcgcacgctgcacaccatgcgc
ggcctggacctggtgccggtgtcggaattccagctcgtcaccgagaccatccgccgcttc
cgcatgggctacgttgccgcgtttggtgcgccgcatccggacgaccagctgtacgccgcg
gtcagcgaaggccgccgccatcccggcatggagcactggctgccgctgttccaggagcgg
atggacacgctgttcgagtacctgaaaggtacgccggtcgcgatcgagccgcagagcgaa
gacgccgcgcgcgagcgcttcaagcagattgccgactactacgacgcccggcgcgaagcg
atggagcagcccggctccggcgcgatctataagccgctgccgccggatcggctgtatctc
accgacagtgaatggaccgcgcggctcgaaggtgtcgccctggcgcggctgacgccattc
gcgctgccggacgacaccaacgacgtgatcgatgccggtgcccgtgccggccgcaacttc
gcgccggagcgcgcggacgccaacgtcaacgtgttcgagacgctggtggcgcacgtctat
gcgctgcaggcggcgcgcaagaaggtggtaatcgcgctgtggagcgaaggctcgcgcgac
cgcatggcgagcatgctgaaggaccacaagctggtcgcgctcaccagcgtcaattcctgg
cgtaccgtgcaggcgacgccgcgcaacgaaaccatgctggcggtggtcgggctggagtcc
ggcttcgagaccgatgcgtttgcggtgatcaccgagcaggatgtgctcggcgaccgattg
gtgcggcagcggaaggccagcaagaagctcgacaacttcatctccgaggtcaccagcctc
tcgaccggtgacatcgtggtgcatgtcgagcacggcatcggccgcttcgtcgggctgcag
acgctcgaagtcggcggcgcgccgcacgattgcgtcgaacttcactacgccaacgacacc
aagctgttcctgccggtcgagaacatcgagctgctgtcacgctacggctccgacggcacc
gcggtcgaactcgacaagctcggcggctccggttggcaggcgcgcaaggccaagctgaag
aaccgtatccggcagatcgccggcgaactgatcaaggtcgcggccgaacggcacttgcgc
gaggcgccgaagctgccggtgcagccgcagctctatgacgagttctgcgcgcgcttcccc
tacgacgagaccgaggatcagctcgctgcgattaacgccgcgctgagcgatctggagaag
ggcacgccgatggaccgcctggtttgcggcgacgtcggtttcggcaagaccgaggtggcg
ctgcgcgcggcgtttgccgtggcgctcgacggcaagcaggtcgcggtcgtggtcccgacc
acgctgctcgcgcggcagcacgccaagaccttcaccgaacggttccgtggcttcccggtg
aatgtcggccaagcctcgcggctggtttcgaccaaggagctgtcgcaggtcaagaagggc
attgccgacggcacgctcgacatcgtggtcggcacgcacgcgctgctcggcaagtcgatc
aagttcaaggacctcggcctcgtcatcgtcgacgaggagcagcacttcggcgtcacccac
aaggagaagctgaagcagcttcgctccgaggtccacgtgctgacgctgagcgcgacgccg
atcccgcgcacgctgcagctcgccatgaccggcgtgcgcgacctgtcgatcattgcttcg
ccgccggtcgaccggctcgcggtgcgaaccttcgtggcgccgcacgatccgctgatgatc
cgcgaagcgctgctgcgcgagcgctatcgcggcggtcaggcgttctacgtcgtgccgcgg
atcgacgatctcgccgaggtgaaggacttcctcgacaagcatgtgccggagatgaaggtc
gcggtggcgcacggccagatgccgccggcggtgatcgaggacatcatgtcggcgttctac
gacggcaagttcgacatcctgctgtcgaccacgatcgtcgaatccggcctggacatcccc
aacgcgaacacgctgatcgtgcaccgcgccgacatgtttggcctggcgcaattgtatcag
ctccgcggccgcgtcggccggtccaagctgcgcgcctacgcgctgttcacgctgccgcag
cacaacatcaccgcccaggcggagcgccggctcaaggtgctgcaatcgctggaaacgctc
ggcgccggcttccagctcgcctcgcacgacctcgatatccgcggcgccggcaatctgctc
ggcgaggagcagtccggccacatcaaggaagtcggcttcgagctgtatcagcagatgctg
gaggaggcgatcaccaacctcaaggccggcatcgtcgacgagccggtcgccgaccgctgg
tcgccgcagatcaccattggcatgccggtgctgattccggaggacttcgtcgccgatctt
gcggtgcggctgtcgctgtatcgccggctcgccgatctcgacaccgacgaggagatcgag
aacttcgccgccgagctgcgcgaccgtttcggtccgctgccggacgaggtccgctacctg
ttcaaggtggcggcgatcaaggcgtattgccgccgtgccaatgtcgagaaggtcgacgcc
ggtccgaagggcgtcgtcatcagcttccgcgacaacgccttcgcacagccggacaagctg
gtgttcttcatcaagcgccacggtgaagccgccaaggtgcggcccgacatgaaggtggtg
ttcttccaggtctgggagacgccggaagagcggttgatggggacgaccgatatcctcaag
cagctcgccgacctcgccgagaaccgcaaggcggcgtga
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