Rhodoferax sp. WC2427: AB3G31_05935
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Entry
AB3G31_05935 CDS
T10716
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rhof Rhodoferax sp. WC2427
Brite
KEGG Orthology (KO) [BR:
rhof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhof03016
]
AB3G31_05935
Enzymes [BR:
rhof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AB3G31_05935
Transfer RNA biogenesis [BR:
rhof03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AB3G31_05935
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
FMN_red
S1
Motif
Other DBs
NCBI-ProteinID:
XDC20160
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All DBs
Position
1233530..1235005
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AA seq
491 aa
AA seq
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MQAHPNVHHRSDLVRIAIQAMSERGLMPEFSPAVDRQLAGITATGDSADPAVHDLTALLW
CSIDNDDSLDLDQLTVSEAMPNGSVRLWVAIADVDALVPRDSPIDQHASTNTTSVYTSAR
IFPMLPERLSTDLTSLNPQQDRLAMVTEMVFHADASLAGSTVYRAKVRNQAKLAYDAVSA
WLTGQGALPAAAAAVPGMDAQLRTQDSLAQQLRARRHAAGALEFESFQPRVVFDGERVSD
IHLQEHNRARQLIEEVMIATNTCTARYLLGQGIASMRRVVRSPERWLRIVAVAKEYGAVL
PPDPNSKALEDFLAKRRRADPLRFADLSLVIVKLMGRGEYVLETPGSLAVGHFGLAVTDY
THSTAPNRRFPDLITARLLKAALAQQPAPYSSAELDALATHCTRQEDAAQKVERQMRKSE
AALLLESRIGQRFDAIVTGNAADGMWVRLLNPPAEGKLLRGLSALKVGDKVRVKLLSTNV
ERGFIDFEAAP
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcccaccccaatgtccaccaccgcagcgatttggttcgcattgccatccaggcc
atgtctgagcgcggcctgatgcccgaattctcgcccgctgtagatcgccagttggccggc
attacggccaccggcgacagcgcagatcctgccgtgcatgacctcaccgccttgctgtgg
tgctccatcgacaacgacgactcgctggacctggaccagctcaccgtgtctgaagccatg
cccaatggcagcgtgcgcctgtgggtggccattgccgatgtggatgccctggtgccgcgc
gacagccccattgaccagcacgccagcaccaacaccacctcggtctacacctcggcgcgc
atcttccccatgctgcccgagcgcctgtcgaccgacctgacctcgctcaacccccagcag
gaccgcctggccatggtgaccgagatggtgttccacgccgacgcctcgctggccggctcc
actgtttaccgggccaaggtgcgcaaccaggccaagctggcctatgacgccgtcagcgcc
tggctgaccggccagggcgcattgcctgctgcggccgccgccgtgccgggcatggacgcg
caactgcgcacgcaagattctttggcccagcaactgcgggcccgacgccacgcggccggt
gcgctggagtttgaatcctttcagccgcgcgtcgtgttcgatggcgagcgggtgtccgac
atccacctgcaagagcacaaccgtgcccgccagctgattgaagaagtcatgattgccacc
aacacctgcactgcgcgctatctattggggcagggcatcgcctcgatgcgccgcgtggtg
cgctcgcccgagcgctggttgcgtatcgtggccgtggccaaggaatatggcgcggtgttg
ccgcccgaccccaactccaaggcgctggaggactttctggccaagcggcgccgggccgac
ccgctgcgttttgccgacctgtcgctggtcatcgtcaagctcatggggcggggcgaatac
gtgctcgaaaccccgggtagcctggccgtggggcactttgggctggcggtgacggactac
acccactccaccgcgcccaaccggcgcttccccgacctcatcaccgcgcggctgctcaag
gccgctctggcccaacagcccgcaccgtattccagcgccgagctggacgcgctggccacc
cactgcacccgccaggaagatgcggcgcaaaaggtggagcgccagatgcgcaagtccgag
gcagcgttgctgctggagtcacggattggccagcgctttgacgccatcgtcaccggcaac
gccgccgatggcatgtgggtacgcctgctgaacccgcctgccgagggcaagctgctccga
ggtttaagtgcgctcaaggtgggagacaaagtgcgcgtcaaactcttgtccaccaatgtc
gagcgcggctttattgactttgaagccgccccgtaa
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