Rhodoferax sp. WC2427: AB3G31_10320
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Entry
AB3G31_10320 CDS
T10716
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rhof Rhodoferax sp. WC2427
Brite
Enzymes [BR:
rhof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AB3G31_10320 (hrpA)
Messenger RNA biogenesis [BR:
rhof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AB3G31_10320 (hrpA)
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Other DBs
NCBI-ProteinID:
XDC20993
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Position
2178796..2182683
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AA seq
1295 aa
AA seq
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MLKIEFPESLPVSAKRDEIMEAIAQHQVVIVCGETGSGKTTQLPKIALAMGRGKLNHPGA
HGHLIGHTQPRRIAASSVAKRIAEELKTPLGDVVGFKVRFQDRLGRDASVKLMTDGILLA
ETQTDPLLQAYDTLIIDEAHERSLNIDFLLGYLRQILPRRPDLKVIVTSATIDADRFSKH
FESRHGPAPVIMVSGRMFPVEQRYRPFEESREYGLNDAIADGVDELWRDPHNAGDILIFL
PGEREIREAADHLRKHVSHQPLYRSAEVLPLFARLSPAEQDRIFDNHGDRRIVLATNVAE
TSLTVPGTRYVIDAGTARIKRYSFRSKVEQLLVEPVSQSSANQRAGRCGRVANGICIRLY
DEVDFNGRPRFTDPEILRSSLAGVILRMKSLHLGVVDDFPFLERPSSRAIADGYQLLNEL
GAVDDANELTAMGKELAKLPLDPRVGRMILEARDRQALDEVLVIASALSVQDVRDRPMDM
QAQADQAHAKFDDDRSEFSGYLNLWKWINDARGGNGGEGSAHKLSNRQYEQLLRQNFVNI
RRVREWRDIYSQLHTVVAEHKWRLNAAPASYEQIHLSMLSGLLGNIGWKTEGDEVAQTEY
LGARGIKFHRHPGAHLRKKPGRWIVVAELVETTRLFGRGIAGIEPQWVEQVAGHLLKKQL
LDPHWEKKASEVTALERATLYGIVIYSGRRANFGRVDPVGAREIFIREALVQGQWDCKFP
FLEANLKLIKQVEDLEHKARRQDVLVDDELIYAFYDQQLPADVYGGASFERWYRDALQHN
PKLLLLTREELMRHEAAGITTQSFPKTIRLGGVDCAATYLHEPGDAKDGLTVTVPLFVLN
QVNDERCEWLVPGMLKDKVQALIKTLHQRPRSRLVPLPETARTMAETLNTPELFGQGPLV
DAVLKLVRAATSLDIARADIKADMLSPHLFMHFRVVDEHGRQLGTGRNLGALKAELGAQA
RGAFQALAGLKMAQNAETSKPNQPAAPIPSAQAATKKVATPVAPAHQRYTAWTFGELPEL
LEIQKGGQTLIGYPGLIDAIDAVTIEVFDEPEVAAAKHRAGLRRLFSLQIKDALKYLEKN
IPDLQKMAVVYMQVGKNADGSGGGTVEELRAQIIDVALDRAFLLDPLPTDEFAFKRRIDE
GRGRLTLIANEVARLALTVLTEYGTAARKIKDTKNAPEATADAAQQLARLIPKRFLAATP
WPALQHTARYLKAITARLDKYRADPARDAARMLELRPQEQRYWRLVAERKGVADARMQEF
RWLLEELRVSFFAQELKTPQPISVKRLDKAWAQLG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaaatcgagttccccgaatccctgcccgtatccgccaagcgcgacgagatcatg
gaggccattgcccagcaccaggtggtgatcgtgtgtggcgaaaccggctccggcaaaacc
acccagttgcccaagatcgccctggccatgggccgcggcaagctgaaccatcctggcgcg
cacggccacctcatcggccacacccagccgcggcggattgcggccagttcggtggccaag
cgcattgccgaagagctcaaaaccccgctgggcgatgtggtgggtttcaaggtgcgtttc
caggaccgcctggggcgcgatgcctcggtgaagctcatgaccgacggcatcttgctggcc
gagacgcagaccgaccctttgctgcaggcctacgacacgctgatcatcgacgaggcgcac
gagcgcagcctgaacatcgactttttgctgggctacctgcgccagatattgccgcgcagg
ccggatttgaaggtgatcgtcacctcggccaccatcgatgccgaccgcttctccaagcac
tttgaatcgcgccacggcccggcacccgtcatcatggtgtcagggcgcatgttcccggtg
gagcagcgctaccgccccttcgaggaaagccgtgaatacgggctgaacgacgcgattgcc
gacggtgtggacgagctgtggcgcgacccgcacaacgcgggcgacatcctgatcttccta
cccggcgagcgcgaaatccgcgaggccgccgaccacctgcgcaagcacgtctcacaccag
ccgctgtaccgcagcgccgaggtgctgccgctgtttgcccgcctgagcccggccgagcag
gaccgcatcttcgacaaccatggcgaccgccgcatcgtgctggccaccaacgtggccgaa
acctcgctcaccgtgccgggcacgagatacgtgattgacgcaggtaccgcgcgcatcaag
cgctacagtttcagaagcaaagtggagcagctgctggtggagccggtcagccagtcttcg
gccaaccagcgcgccgggcgctgcgggcgggtggccaacggcatctgcatccggctgtac
gacgaggtggacttcaatggccgcccgcgctttaccgaccccgaaatcctgcgcagctcc
cttgcgggcgtgatcttgcgcatgaagtcgctgcacctgggcgtggtggacgacttcccg
ttcctggagcgcccctccagccgcgcgattgccgacggctaccagctgctcaacgagctg
ggcgcggtggacgatgcgaacgagctcaccgccatgggcaaagagctggccaagctgccg
ctcgacccgcgcgtgggccgcatgattctggaagcccgcgaccggcaggcgctggatgag
gtgctggtgattgcatcggccctgagcgtgcaggacgtgcgcgaccgccccatggacatg
caggcccaggccgaccaggcgcacgccaagtttgacgacgaccgcagtgaattcagcggc
tacctgaacctgtggaagtggatcaacgacgcacggggcggaaatggtggagaggggagc
gcacacaagctcagcaatcgccagtacgagcagttgctgcggcaaaacttcgtcaacatc
cgccgcgtgcgcgagtggcgcgacatctacagccagctgcacaccgtggtggccgagcac
aagtggcgcttgaacgccgccccggccagctacgagcaaatccacctctccatgctgtcg
ggcctgctgggcaacatcggctggaagaccgagggcgacgaggtggcgcagaccgagtac
ctgggcgcgcgcggcatcaagttccaccgccatcccggcgcgcatctgcgcaagaagccg
ggccgctggatcgtggtggccgagctggtggaaaccacgcgcctgtttggccgcggcatt
gcgggcatcgagccgcagtgggtggagcaggtggcaggccatttgctcaaaaagcagctg
ctcgacccgcattgggaaaagaaggccagcgaggtcaccgcgctggagcgggccacgctg
tacggcatcgtcatctacagcggccgccgcgccaactttggccgggtggacccggtgggc
gcccgcgagatcttcatccgcgaagccctggtacagggccagtgggactgcaagttcccg
ttcctggaggccaacctcaagctcatcaagcaggtggaagacctggagcacaaggcccgc
aggcaagacgtgctggtagacgacgagctgatctacgccttctacgaccagcaattgccc
gccgatgtgtacggcggcgccagcttcgagcgctggtaccgcgacgcgctgcagcacaac
cccaagctcctgctgctgacccgcgaggagctgatgcgccacgaggcggcgggcatcacc
acccagtctttccccaagaccatccgcctgggcggcgtggactgcgcggcgacctatttg
cacgagccgggcgatgccaaagacggcctgaccgtcaccgtgccgctgttcgtgttgaac
caggtgaacgacgagcgctgcgaatggctggtgcccggcatgctcaaagacaaggtgcag
gccctcatcaaaaccctgcaccagcgcccgcgctcgcgcctggtgccgctgcccgaaacc
gcccgtacgatggccgagacgctgaacacgcccgagctgttcggccagggcccgctggtg
gatgcggtgctgaagctggtgcgtgccgccacctcgctggacattgcccgcgccgacatc
aaggccgacatgctcagcccgcacctgttcatgcacttccgcgtggtggacgagcatggc
cgccagctcggcacaggccgcaacctgggcgcgctgaaggccgagctgggcgcgcaggcg
cgtggggccttccaggctctggcgggcttaaagatggcccagaatgctgagacttccaag
ccaaatcagcctgcagcgcccattccgtcagcgcaagcagctactaaaaaagtagcaacg
ccggtggcccccgcccaccagcgctacaccgcctggacctttggcgagctgcccgagctg
ctggaaatccagaagggcggccagacgctgatcggctaccccggcctgatcgatgcgatt
gacgcggtgaccatcgaagttttcgacgagcccgaagtggccgccgccaagcaccgcgcc
ggcctgcgccgcctgttctcgctgcagatcaaggacgcgctgaagtacctggaaaaaaac
atccccgacctgcaaaaaatggccgtggtctacatgcaggtgggcaagaacgccgacggc
tcgggcggtggcacggtagaggagctgcgcgcgcaaatcatcgacgtggcactcgaccgg
gcctttttgctcgacccgctgcccaccgacgaatttgccttcaagcgccgcatcgacgaa
ggccggggccgcctgaccctgatcgccaacgaggtggcgcgcctggcgctgacggtgctc
accgaatacggcacggccgcccgcaagatcaaggacaccaagaacgcccccgaggccacg
gccgatgccgcccagcaactcgcccgcttgatccccaagcgtttcctcgctgccaccccc
tggcccgcgctgcagcacaccgcccgctacctcaaggccatcaccgcccggctggacaaa
taccgcgccgacccggcccgcgacgccgcccgcatgctggagctgcgcccgcaggaacag
cgctactggcggctggtggccgagcgcaagggcgtggcggatgcgcgcatgcaggaattc
cgctggctgctggaagagctgcgcgtgagcttttttgcgcaagagctgaaaaccccgcag
cccatcagcgtgaagcggctggacaaagcctgggcgcagctgggctag
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