Rhodoferax sp. WC2427: AB3G31_20125
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Entry
AB3G31_20125 CDS
T10716
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
rhof Rhodoferax sp. WC2427
Pathway
rhof02020
Two-component system
rhof02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rhof00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AB3G31_20125
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AB3G31_20125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhof03021
]
AB3G31_20125
Transcription machinery [BR:
rhof03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AB3G31_20125
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
HTH_5
HTH_23
Motif
Other DBs
NCBI-ProteinID:
XDC18648
LinkDB
All DBs
Position
complement(4321160..4322737)
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AA seq
525 aa
AA seq
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MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVDQMLDDNPFLERNLDDAPREEFG
LAQADTPVSAGDRETESAPTSVAEYTSETSTEGSNDSESPLTGGDDTSWDGDGTSEMKPD
DSEWGGDAPARQNNLGEDGEADATELARNQESLTSFLHRQALALRLGEVDQAALRFLIES
LNDDGYLEDDLASLAQGLAGDDLEAQEELVHRFTVALGLLQSLEPAGVGATHLGECLVLQ
LKALQSTMGNDPVRKIALRICRQPMDLLARRDVKRLAQLCHATDADIKLAIALIARLEPK
PGRRFVDVERNIVVPDVIVAKVGRGANAKFRVVLNPEVMPRLRVHDIYANALRQHKGGGK
DSSNNAALQQRLQEARWFIKNIQQRFDTILRVSNAIVERQKSFFSHGALAMRPLVLREIA
DELGLHESTISRVTTAKYMATPYGTFELKYFFGSSLGTETGGNASSTAVRALIKQFVASE
DLKKPLSDSQLSDMLKEQGIECARRTVAKYREALRIAPTNLRKAL
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggcctttccctacgcgtttcccagcacctggcgctcacgccccagttgcag
cagtccatccgcctgttgcagctctccaccctggagctgagccaggaagtggaccagatg
ctggacgacaacccgtttctggaacgcaacctggacgacgcaccccgcgaagagtttggc
ctggcccaggccgacacgcccgtgagcgcaggcgaccgcgaaaccgaatctgctcctact
tctgtagctgaatacacaagcgagaccagcaccgagggctcaaatgactcagagtcgccg
ctgaccggtggggacgacaccagctgggatggcgacggcacctccgagatgaagcccgac
gacagcgagtggggcggcgacgcacccgcccgccagaacaacctgggcgaagacggcgag
gccgatgccaccgagctggcccgcaaccaggaatcgctgaccagctttttgcaccgccag
gcactggcgctgcgcctgggtgaggtagaccaggcggcgctgcgcttcctgatcgagtcc
ctgaacgacgacggctacctcgaagacgacctggccagcctggcccagggcctggcgggc
gacgacctggaggcccaggaagagctggtgcaccgcttcaccgtcgccttgggcctgctg
caaagcctggagcccgctggcgtgggtgcgacccatctgggcgaatgcctggtgttgcag
ctcaaggcgttgcaatccaccatgggcaacgacccggtgcgcaagatcgcactgcgcatc
tgccgccagcccatggacctgctggcccggcgcgacgtgaagcgcctggcccagctctgc
cacgccaccgatgccgacatcaaactggccattgcgctgatcgcccggctggagcccaag
cctggccgccgctttgtggatgtggagcgcaacatcgtggtgcccgacgtgatcgtggcc
aaagtggggcggggtgccaacgccaagttccgggtggtgctgaaccccgaggtcatgccg
cgcctgcgcgtgcacgacatctacgccaacgccctgcgccagcacaagggtggcggcaag
gactcttcgaacaacgccgccctgcagcagcgcttgcaggaagcccgttggttcatcaag
aacatccagcagcgcttcgacaccatcttgcgggtcagtaacgccatcgtggagcggcaa
aaaagcttcttcagccacggcgcgctggccatgcgccccttggtgctgcgcgagattgcc
gacgaactgggcctgcacgagtccaccatcagccgcgtcaccacggccaagtacatggct
acgccctacggcaccttcgagctgaaatacttcttcggctcatccctgggcaccgagacg
ggcggcaatgcctccagcacggcggtgcgcgcgctcatcaagcagttcgttgcctccgaa
gacctgaaaaagccgctcagcgacagccaactgtcggatatgctgaaagagcagggcatc
gaatgcgcccgccgcacggtagccaagtaccgcgaagccttgcggatcgcgccgacgaat
ctgcgcaaggcgctgtag
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