Rhodoferax sp. GW822-FHT02A01: AAGF34_18320
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Entry
AAGF34_18320 CDS
T11686
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rhog Rhodoferax sp. GW822-FHT02A01
Pathway
rhog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAGF34_18320 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhog03021
]
AAGF34_18320 (rho)
03019 Messenger RNA biogenesis [BR:
rhog03019
]
AAGF34_18320 (rho)
Transcription machinery [BR:
rhog03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AAGF34_18320 (rho)
Messenger RNA biogenesis [BR:
rhog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AAGF34_18320 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_25
Motif
Other DBs
NCBI-ProteinID:
XAF48131
LinkDB
All DBs
Position
complement(3885610..3886872)
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AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEELEIENTGRMRKQELMFAIIKKRARTGEQIIADGVLEILPD
GFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALNKLDKVN
GGAPEGNKHKVMFENLTPLFPKVQMKLEQDIKGEENITGRVIDIIAPIGKGQRALIVAQP
KSGKTVMMQHIAHAISANYPESYLMVLLIDERPEEVTEMQRTVKGEVIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALQRPKRF
LGAARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSEIHLDRRLYEKRVFPSIQL
NRSGTRREELLLQPEILQKTRILRQFLYNMDEVEAMEMVLKQMRATKTNNEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacttaaatgaactcaaggcactgcacgtgtccgaagtcttgaaacaggctgaagag
cttgagatcgaaaacaccggccgcatgcgcaagcaggagctgatgttcgccatcatcaag
aagcgcgcccgtaccggcgagcagatcattgccgatggcgtgctggaaatcctgccggac
ggttttggttttctgcgtagcccggacaccagctacaccgccagcaccgacgacatctac
atcagccccagccaggtacgccgcttcaatctgcacaccggcgacatgatcgaaggtgaa
gtgcgtacgcctaaggatggcgaacgctactttgcactgaacaagctggacaaggtcaat
ggcggagcgcccgaaggcaacaagcacaaggtcatgttcgaaaacctgacgccgctgttc
cccaaggtgcagatgaagctggagcaggacatcaagggcgaggaaaacatcaccggtcgc
gtgatcgacatcatcgcccccatcggcaaaggccagcgcgccctgatcgtggcccagccc
aagagcggcaagacggtgatgatgcagcacattgcgcacgccatttcggccaactacccc
gagagctatctgatggtgctgctgatcgacgagcgccccgaagaagtgaccgaaatgcag
cgcaccgtcaagggcgaggtgattgcctccaccttcgacgagcccgccgcccgccacgtg
cacgtggccgaaatggtgatcgagcgcgccaagcgtttggtcgagctcaagaaggacgtg
gtgatcctgctggactccatcacccgtctggcccgcgcctacaacaacgtggtgccctcc
tccggcaaagtgctgaccggcggtgtggacgccaacgcgctgcaacgccccaagcgcttc
ctgggcgcagcccgcaatgtggaagaaggcggctcgctcaccatcatcgccacggcgctg
gtggacactggcagccgcatggacgaagtgatctttgaagaattcaagggcactggcaac
tccgaaatccacctggaccgccgcctgtacgaaaagcgcgtgttcccttccatccagctc
aaccgcagcggtacccgccgcgaggaactgctgctgcagccggaaatcctgcaaaagacc
cgcatactgcgccagttcctctacaacatggatgaagtggaagccatggagatggtgctc
aagcagatgcgcgccaccaagaccaacaacgagttcttcgacatgatgcgtcggggcgga
tga
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