Rhodococcus sp. H-CA8f: CPI83_07950
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Entry
CPI83_07950 CDS
T10533
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rhoh Rhodococcus sp. H-CA8f
Pathway
rhoh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CPI83_07950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhoh03400
]
CPI83_07950
Enzymes [BR:
rhoh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CPI83_07950
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CPI83_07950
DNA repair and recombination proteins [BR:
rhoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CPI83_07950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
ATI31990
LinkDB
All DBs
Position
1649788..1650654
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AA seq
288 aa
AA seq
DB search
MPELPEVEALAGFLRQHAVGAVVGRVDIAALSVLKTFDPPITALQGRDVTGAARFGKHLA
LDCDGLWLVTHLSRAGWMRWLDNPSPTPPKPGKGPLALRVHFFTPEGLTPAFDLTEAGTK
KRLAVWVVNDPQEVPGIARLGPDAMAVTEAEFAEILGGTSARIKNSIVDQSLIAGIGNAY
SDEILHTAKLSPFATSSRLTPEQISTLYAVMRSTLADAIERSEGQDAARLKGEKRSGMRV
HARTGLPCPVCGDVVREVSFAERSFQYCATCQTGGKPLADRRMSKLLK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactacccgaggtggaagcgctggcagggttccttcgtcagcacgcggtcggc
gcagtagtgggacgcgtcgatatcgctgcattgagtgtgctcaagaccttcgatccgccg
atcacggctttgcaagggcgtgacgtcacgggcgccgcccgcttcgggaagcatctggct
ctggattgcgacgggttgtggttggtcacgcatctctcccgtgccggttggatgcggtgg
ctcgataatccgtcgccaacgccgccgaagccggggaaggggccgttggcgctgcgcgtt
catttcttcacacctgaagggttgacgccggcgttcgatctcaccgaagccggcaccaag
aagcgcctcgccgtgtgggtggtgaacgatccgcaggaggttccgggcatcgcccggttg
gggccggacgcgatggctgtgacagaagctgagttcgcagagattctgggcgggacgtcg
gcgcggatcaagaactcgatagtcgatcagtcgttgatcgccggcatcgggaacgcctac
tcggacgagatcctccacaccgcgaaactatcgccattcgcgacctcgtcgcggctgacg
ccggagcagatttcgacgctgtatgccgtgatgcggtccacgctggccgacgcgatcgag
cgttcggaaggtcaggacgcggcgcggctcaaaggtgagaaacgctcggggatgcgagta
catgctcgcaccggacttccctgtccggtgtgcggtgacgtcgtacgcgaggtgtcgttc
gcggagcgttcttttcaatactgtgcgacgtgccagacaggcggtaagccgttggcggac
aggcgaatgtcgaaactgctcaagtag
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