Rhodococcus sp. H-CA8f: CPI83_18205
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Entry
CPI83_18205 CDS
T10533
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhoh Rhodococcus sp. H-CA8f
Pathway
rhoh03420
Nucleotide excision repair
rhoh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPI83_18205
03430 Mismatch repair
CPI83_18205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhoh03400
]
CPI83_18205
Enzymes [BR:
rhoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPI83_18205
DNA repair and recombination proteins [BR:
rhoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPI83_18205
MMR (mismatch excision repair)
Other MMR factors
CPI83_18205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
NNH1
Motif
Other DBs
NCBI-ProteinID:
ATI33761
LinkDB
All DBs
Position
complement(3909825..3913217)
Genome browser
AA seq
1130 aa
AA seq
DB search
MAAATQKARRPKIDPVDLAVALGQHPPTPEQAAVIAAPLGPTLVVAGAGAGKTETMAARV
VWLVANGFVDPEAVLGLTFTRKAAQQLTSRIRKRLARLAGSDVLRALDPTGGVRSRILAG
EPEVSTYHAYAGRLLSEHGLLLPIEPSATLLSETELWQVAHRVVSGWDSDLDTDKNPGSI
TETVLALAGQLAEHLVDPEQLLEAHTELDKLIHTLPAGPKQRGGPSKELLNYLDVQHKRI
ELLPLVARLGETLRREGALDFGSQMSLSARVAAEHPEVGQTERERFRVVLLDEYQDTGHA
QRVLLSSLFGGGTDGRLALTAVGDPMQSIYGWRGASAANLPRFATDFPLANGKPAPTLEL
LTSWRNPPEALELANLSSAPLRRRGVAVSTLRARPGAVAGDVRLALLGDVEQERQWVAEK
IAEEYEAARAEDRPTPTAAVLIRRNADAAPLAEALRSKGLPVEVVGLGGLLHTPEVADVI
AMLRVVADPLAGSAAVRLLTGARWQIGAKDLAALSQRSRELAISAGYGTAGAVTDAEALT
SAVHDALPGENAEQAGLVDSISDPGPAERYSALGYTRINAIAAELASLRERIGQPLTELV
AEVERVLGIGIEAGARTRVGVVGTAGREHLDAFADVVANYATRPTANLTGMLAFFAAAEQ
IEKGLTPGEVEVAPDRVQILTVHSAKGLEWEVVAIPHVSDGVFPSSTASGSWLGALAELP
PSLRGDRAVDADSADGVPVLDLEELYNRKDLENAITAHKKALSNRRLDEDRRLFYVALTR
TERALFISAHHWAESGSEPKGPSEFLDELHQMVTADNDADEEDSRGAIGVVEEWAPAPEP
DTENPLAATPRTAQWPPDPLGARRGAVEAGAASVLSALASLPQDSEEAEEPEDDPENWAS
DVDVLLAEREARANARAEVILPAQLSVTQLVDLKADPDELAARLRRPLPYPPNPLARRGT
AFHAWIERRFGATRLLDLDELPGAADTGAGPETDLVKLQDAFLRSPWANRSPIEVEVPFE
TSIAGTVLRGRIDAVFADPDGGWTVIDWKTGAEPSAANEDAVVMQLAAYRVAWAELMSAR
ARSAGRNEQFPADKVRAAFHYVRSGRTIAPENLPDGEALARLIRTAGAQD
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
gtggctgccgcgacgcagaaggcacgccgaccgaagatcgaccctgtcgacctggcggtc
gcgctcggtcagcaccctccgacgcccgagcaggcagcagtgatcgccgcaccgctcggt
ccgacattggtggtcgccggcgccggtgccggaaagaccgagacgatggctgctcgcgtc
gtgtggctggtggccaacggcttcgtcgaccccgaggcggttctcggcctgaccttcacg
cgcaaagcggcgcaacagctcacgtcgcgaatccgcaagcggttggcgcggctggcgggt
tcggacgttctgcgggcactcgacccgaccggcggagtgcgttcccggattctggccggc
gaacccgaagtcagtacctaccatgcttacgcgggacggttgctctccgaacacggactg
ctgttgcccatcgaaccctcggcgacgttgttgtccgagaccgaactgtggcaggttgcg
caccgcgtcgtgagcggctgggacagtgatctggacaccgacaagaatccgggttcgatc
accgaaaccgttctggcccttgccggtcagttggcggagcacctggtcgatcccgagcag
ttgctcgaggcacacaccgagctggacaagctgattcacactctgcccgccggcccgaaa
cagcggggtggaccgagcaaggagctgttgaattaccttgatgtgcaacataagcgcatc
gaactgttgcctctcgtcgcccggctgggtgagacgctgcggcgtgaaggcgcattggat
ttcggcagccagatgtcgctgtctgcccgggtcgccgccgagcatcccgaggtcgggcag
accgagcgagagcgctttcgggtggttcttctcgacgagtaccaggacaccggtcacgct
cagcgagtgttgttgtcctcgttgttcggtgggggaaccgacggccgcttggcgctgacg
gccgtcggcgatccgatgcagtcgatctacggttggcgcggcgcgtcggcggccaacctg
ccccggtttgcaaccgacttcccccttgccaacggaaaaccggctccgacgctcgaactg
ctcaccagttggcgtaacccgccggaggctctcgagctggccaacctgtcttcggcgccg
ttgcgtcgacgcggcgtggccgtcagtaccctgcgtgcacggccgggagccgtcgccgga
gacgttcgactggcgcttctgggagacgtcgaacaggaacgtcagtgggtggcggagaag
atcgccgaagaatacgaggcggcacgtgccgaagaccgcccgacgcccacggcagcggtg
ttgatccgccggaacgccgatgccgctccgctggccgaggccttgcggtccaaaggtctg
ccggtcgaagtggtcggactcggtgggctcctgcacacacccgaggttgcggacgtgatc
gccatgctccgggtggtcgccgatccgcttgcaggaagcgcagctgttcggctgctcacc
ggcgcgcgatggcagatcggcgcgaaggacctggccgcactctctcaacgctcccgcgaa
cttgccatctccgcgggatacggaacggcgggtgcggtcaccgacgccgaggcgctcacc
tcggcggtccacgatgctctgcccggggagaacgccgagcaagcaggattggtcgactcg
atctccgatccaggcccggcagaacgctattcggctctcgggtacacacgcatcaacgcg
atagcggcagagttggcgtcgttgcgcgaacgtatcggccagccgctcaccgaattggtg
gcggaggtcgagcgggtgctcgggatcggaatcgaggcgggcgcacggacccgagtcggc
gtcgtcgggaccgcgggccgcgagcatctcgacgccttcgccgacgtcgtcgccaactac
gcgacgcgtccaactgccaatctgaccgggatgctggctttcttcgcggcagccgaacag
atcgaaaagggcctcacgccaggcgaagtggaggtggcgccggatcgggtccagatcctg
accgtgcactcggcgaaggggctcgaatgggaagtagtggcgatcccgcatgtcagcgac
ggggtgttcccctcgtccaccgcgtccggatcgtggctcggggcgctcgccgaactgcca
ccgtcgttgcgtggtgaccgggcggtcgacgcggattcggccgacggagttccggtgctc
gacctcgaggagctctacaaccgcaaggacctcgagaacgcgataacggcgcacaagaag
gccttgtccaaccgtcgactggacgaggaccggcggttgttctacgtcgcgctgaccaga
accgaacgggcgctgttcatctcggcgcatcactgggcggaatccggttcggaaccgaag
gggccttcggagttcctggacgagctgcatcagatggtcacggccgacaacgatgccgat
gaggaagactcacgcggtgcgatcggtgtcgtggaggaatgggcgccggccccggaaccc
gataccgagaacccgttggccgccacgccccgtacggcgcagtggccgccggatccgctg
ggtgcgcggcgcggcgccgtcgaggccggagccgcgagcgtcctgtccgctctcgcttcg
ctgccgcaagacagcgaagaggcggaagaaccggaggacgatccggagaactgggcctcg
gacgtcgacgtgctcctggccgagcgcgaggcccgcgcaaacgcgcgtgccgaagtgatt
ctcccggcgcagctttcggtgactcagctcgtcgacctcaaggcagatccggacgaactg
gcggctcgcctacgtcgtccgctgccgtatccgcccaacccgttggctcgtcgtggaacc
gcttttcacgcctggatcgagcgaaggttcggtgcgactcggctgttggatctcgacgag
ctacccggcgccgcggataccggcgcgggtcccgagaccgacctggtgaaacttcaggat
gcgttcttgcggtccccgtgggccaatcgcagcccgatcgaagtggaagttcctttcgaa
acatccattgccggaacggttttgcgcggtcggatcgacgctgtgttcgccgatcccgac
ggcggatggacggtgatcgactggaagaccggtgccgaaccgtcggccgccaacgaggac
gctgttgtgatgcagttggccgcgtatcgggtggcctgggccgaattgatgtcagccaga
gctcgttcggcggggcgcaacgaacagtttccggccgacaaggtgagggcggcgtttcac
tacgttcgatcgggtcgcaccatcgcacccgagaacctgccggacggtgaggctctcgct
cgcctcatccgaacggcaggcgcgcaagattag
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