Rhodococcus sp. H-CA8f: CPI83_20500
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Entry
CPI83_20500 CDS
T10533
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhoh Rhodococcus sp. H-CA8f
Pathway
rhoh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhoh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CPI83_20500 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhoh03021
]
CPI83_20500 (rpoC)
03400 DNA repair and recombination proteins [BR:
rhoh03400
]
CPI83_20500 (rpoC)
Enzymes [BR:
rhoh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CPI83_20500 (rpoC)
Transcription machinery [BR:
rhoh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CPI83_20500 (rpoC)
DNA repair and recombination proteins [BR:
rhoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CPI83_20500 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ATI34161
LinkDB
All DBs
Position
complement(4431323..4435279)
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKTVADQRDADLEARAQKLEAD
IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIIDELL
YRELVDRYGEYFTGAMGAESIQILMQNFDLDAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQTNGNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERKR
VQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLDEGVTGELV
APTNDEAEQGVYSSPAEAQMAVDRGALSVQAQIKVRLTQQRPPRDLENELFPEGWKYGDG
WTATTTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDVGF
YWATRSGVTVSISDVLVPPEKPAIIEDFEAQADKIEKQYQRGALDKKERNSALVTIWQEA
TDKVGKAMEAHFPDSNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSFK
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTTI
AEKQADGTMIRDAHVETSTYARTLAADAVDANGTVIVERGHDLGDPAIDALLEAGITTVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVA
GDDITGGLPRVQELFEARVPKGKAPIADVTGRVQLEDGDRFYKITIVPDDGGEEVVYDKL
SKRQRLRVFKHADGRESLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQE
VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESANRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgcattggcttggccagtgcagaggacatc
cgcaattggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggtaagtacaagcgtgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcactcgcgccaaggttcgtcgtgagcgtatgggtcacatcgaactggccgcaccg
gtcacgcacatctggtacttcaagggtgttccgagccgtctcggttacctgctcgacctg
gctccgaaggatctcgaaaagatcatctacttcgctgcctacgtcatcgtcggcgtcgac
gaggagctccgtcacaacgagctgtccaccctcgaagccgagatgcaggtcgagaagaag
accgtcgcagatcagcgcgatgccgatctcgaggcacgtgcgcagaagctcgaagccgac
atcgccgagctcgaggcagagggcgcgaagtccgatgtccgccgcaaggtcaaggacggc
ggcgagcgcgaaatgcgtcagctccgtgaccgcgcgcagcgtgagctggatcgtctcgac
gagatctggaccaccttcaccaagctgagcgtcaagcagctcatcatcgacgagctcctg
taccgcgagctggtcgaccgttacggcgagtacttcacgggtgcgatgggcgcagagtcc
atccagatcctgatgcagaacttcgacctcgacgccgaggcagagtctctccgcgagacc
atccgcagcggcaagggccagaagaagctgcgtgcactcaagcgcctcaaggtggttgcg
gcattccagaccaacggcaactcgccgatgggcatggtcctcaacgctgttccggtgatc
ccgccggagcttcgcccgatggttcagctcgacggtggacgtttcgcgacgtccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtcgacgcc
ctgttcgacaacggtcgtcgtggacgtccggtcaccggaccgggtaaccgcccgctgaag
tccctgagcgatctgctcaagggcaagcagggtcgtttccgtcagaacctgctcggtaag
cgcgtcgactactcgggtcgttccgtgatcgtcgtcggtcctcagctcaagctgcaccag
tgtggtctgcccaagctgatggctctcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgatctcaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcaagcgc
gtccaggtgtgggacgtcctcgaagaggtcatcgccgagcaccccgtgctgctcaaccgt
gcacctacgctgcaccgtctgggtatccaggcattcgagccgcagctcgtcgagggcaag
gccattcagctccacccgctggtgtgtgaggccttcaacgccgacttcgacggtgaccag
atggctgttcacctcccgctgtcggcagaggctcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctctcgcctgcttcgggtcgcccgctcgccatgccgcgtctggac
atggtcacgggtctgttccacctgacccgtctcgacgagggtgtcaccggtgagctcgtt
gctccgaccaacgacgaggcagagcagggcgtgtactcctcgcccgccgaggctcagatg
gcagtcgatcgcggcgcgctctcggttcaggctcagatcaaggtgcgtctgacgcagcag
cgtccgccgcgcgacctcgagaacgaactgttccccgagggctggaaatacggtgacggc
tggaccgccaccacgacactcggccgtgtgctcttcaacgagctgcttccggcggactac
ccgttcgtcaacgagcagatgccgaagaagcgccaggcgacgatcatcaacgatctcgcc
gagcggtacccgatgatcgtggttgctcagaccgtcgacaagctcaaggacgtcgggttc
tactgggccacccgttcgggtgtcacggtctcgatttccgacgtgctcgtgccgccggag
aagcctgccatcatcgaggacttcgaggctcaggccgacaagatcgagaagcagtaccag
cgtggtgctctggacaagaaggagcgcaacagcgctctggtcaccatttggcaggaagcg
accgacaaggtcggcaaggccatggaggctcacttccccgacagcaacccgatcccgatg
atcgtgaagtccggcgcagccggcaacatgactcaggttcgctcgctcgccggtatgaag
ggtctggtgacaaacccgaagggtgagttcatcccgcgtccgatcaagtcttccttcaag
gaaggcctgaccgttctcgagtacttcatcaacacgcacggtgctcgtaagggtctggcc
gataccgcactccgcaccgccgactcgggttacctgacccgtcgtctggtggacgtttcg
caggacgtcatcgtccgcgaggtcgactgtggaacagagcgcggcatcgtcaccacgatc
gccgagaagcaggccgacggcacgatgatccgcgatgctcacgtggagaccagcacgtac
gcccgtaccttggcggccgatgcagtcgacgcgaacggcaccgtcatcgtcgagcgtggc
cacgatctcggtgaccccgcgatcgatgctctgctcgaagccggcatcacgacggtcaag
gtccgctcggtcctgacctgcaccaccggcaccggcgtttgcgccacttgctacggccgt
tcgatggccaccggcaagctggtcgacatcggtgaggctgtcggtatcgtcgccgcacag
tcgatcggtgagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtcgca
ggagatgacatcaccggcggtctgccgcgtgtccaggagctgttcgaggcacgtgtgccc
aagggcaaggctcccatcgcggacgtcaccggtcgggtacagctcgaagacggcgatcgt
ttctacaagatcaccatcgttccggacgacggcggcgaagaggttgtctacgacaagctc
agcaagcgtcagcgtctgcgcgtcttcaagcatgccgacggtcgcgaaagcctcttggct
gacggtgaccacgtcgaggtcggacagcagctcatggaaggtgctgccgatccccacgag
gtcctgcgagtcatgggtccgcgtcaggttcagatccacttggtcaacgaggtccaggag
gtgtaccggagccagggtgtgtcgatccacgacaagcacatcgaggtcatcgtgcgccag
atgcttcgtcgcgtgacgatcatcgattccggtgccaccgagttcctgcccggttcgctc
accgagcgcgccgagttcgagtcggcaaaccgccgcgttgtcgccgagggtggcgagccc
gcagccggccgtccggtgcttatgggtatcacgaaggcgtcgctcgcgacggattcgtgg
ctgtccgcggcatcgttccaggagaccactcgtgtcttgaccgacgcggctatcaactgc
cgctcggacaagctgatcggtctgaaggaaaatgtcatcatcggtaagctgatccctgcc
ggtaccggtatcaaccgttaccgcaacatccaggttcagcccaccgaagaggcacgcgcc
gctgcttacgcagtgccgtcgtacgacgaccagtactacagcccggacggcttcggccag
aacaccggtgctgcagttccgctggacgactacggcttcagcaacgactaccgctaa
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