Rhodococcus sp. H-CA8f: CPI83_24955
Help
Entry
CPI83_24955 CDS
T10533
Name
(GenBank) AAA family ATPase
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
rhoh Rhodococcus sp. H-CA8f
Pathway
rhoh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CPI83_24955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhoh03400
]
CPI83_24955
Enzymes [BR:
rhoh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CPI83_24955
DNA repair and recombination proteins [BR:
rhoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CPI83_24955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PDDEXK_1
Viral_helicase1
ResIII
Motif
Other DBs
NCBI-ProteinID:
ATI34951
LinkDB
All DBs
Position
complement(5369973..5373290)
Genome browser
AA seq
1105 aa
AA seq
DB search
MDFDLLGPLPTGTAVLEASAGTGKTYAIVGLATRCVAEGLADISQVLLVTFSRAATQELR
ERARERFAGVSAALVDPEAARRSDDDLVSYLATADDEEIGVRRRRLLRALAEFDAGTITT
THSFCQRMLDGLGIAGEREPDTTFVESVDDLISEVVSDLYLSRYSRTDSSPPFSTKDALA
IARSAVGDGQAILEPDGEEETAPGQRVLFAAAARLEVERRKRTKGIRDFNDLLTLLHGVL
TDPEYGPVACRRVREKFKVVLIDEFQDTDPLQWDILRLAFHGHTTLVLVGDPKQAIYAFR
GAEVLSYLDAVDQADAHQELTTNWRSDPGLLAALEHLYGGAALGNEGIVAHPVEASHKKS
RLSGPVPMRVRHLPRTGAGPLNRSGFPAVGRLRSRVADDVAADVVGLLGSDARLAVDGDP
RPVEPGDVAVLVRTHKQVAMIRDALDAVGVPSVLTGGSSVFATSSAIQWLWLLQAIEQPH
RSDRVRLTALSPIFGRTAEELDLDGDNVVAELAGQLRSYSGLFARVGFAAVFERVSAETN
LEKRVLAAPSGERDFTDLRHVAQLLGRVAIEEAFGLSALVRWLSDRIKDPTSGSATDRSR
RLDSDAAAVQIATVHATKGLEFPIVYVPFSWESVGGFNSPTQLLHDPEGRRILDVGGQEG
PGHNARKTVAEAEEAGEELRLLYVALTRAQCQLVLWWAPSYGTSRSPLHRLMLGRTPGIA
EPARVVKVLDDGTTAARLATWPAAASDVISVEPVGPHPPSPVQWSGAAADVTELAAARFD
RDLDTLWRRTSYSALTAGAHHAVTSTDSEVEDPEKDDEPEDSVDVGTVIPSPLEALPSPM
NGLPAGAAFGTLVHEVLEVVDTAASDLRAELRIRCAEAVSVRAAEVDSEALADALLLVMQ
TPLGFGTLATIAPKDRLPELDFELPLAGGDDPVSMSVTLRGVSELLRRHLPPDDILASYA
DQLDRVETSPMRGFLTGSIDAVLRIPGPSFVIVDYKTNRLGRGDLTAANYTRELMATEMM
RSHYPLQALLYSVALHRYLRWRLPDYDPHRHLGGAQYQFVRGMLGPDSPPECGVFEWKPP
AQLTVELSDLLAGLDASHTVGEKIR
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
gtggacttcgaccttttggggccactaccgaccggcaccgcggtgttggaagcgagcgcc
ggaactggcaagacctacgcgatcgtcggactcgcgacccgttgtgttgccgaaggtctc
gctgacatttcgcaagttctgctggtgacattcagccgggccgccactcaggaacttcgt
gagcgtgccagggagaggttcgccggagtgtccgccgctctggtcgacccggaggcggcg
aggcggtcggatgatgatctggtgtcgtacctcgcgacagctgacgacgaggagatcggc
gtgcggcgtcgtcgactcctgcgcgctctcgcggagttcgacgccggcaccatcacgaca
acccacagtttctgtcagaggatgctcgacggactcggcatcgccggggaacgcgaaccc
gacacaacttttgtggagtcggtcgacgacctgatcagtgaggtcgtctcggatttgtac
ctcagccgctacagccggacggactcgtctccaccgttttccacgaaggacgcgctggcc
attgcccgaagcgcagtcggcgatggccaggcaattctcgaacccgacggcgaggaggag
accgctcccggtcagcgagtcctgttcgcggcggctgctcgtctcgaggttgaacgacgt
aagcggaccaaaggaattcgcgacttcaacgatctcctgacgctgctgcacggcgtgttg
acggatccggaatacggccccgtcgcgtgccgtagggtgcgcgagaagttcaaggtcgtg
ctgatcgacgagttccaggacaccgatccgttgcagtgggacattctgcggttggccttc
cacggacacaccaccctggtcctggtcggtgatcccaagcaagctatctacgcgttccgc
ggggcagaagtcctgagctatctcgatgcggtcgatcaggcggatgcacaccaggagttg
accaccaattggcgcagcgatccagggttgttggcggcactcgaacacctctacggcggc
gccgcactgggtaacgagggtatcgtcgcgcatccagtggaggcttcgcacaagaagtct
cggttgtccggcccggtgccgatgcgtgtacgccatctgccgcgtaccggagccggaccg
ctcaatcgttcgggatttccggccgtaggcagacttcgcagtcgcgtcgcggacgacgtc
gcagcagacgtggtcggactgctgggcagcgatgcccgcttggcagtcgacggtgatccg
cgcccggtcgagccgggagacgtcgcggtattggtgcggacccacaagcaggtggcgatg
attcgcgatgccctcgatgccgtaggtgtaccgtccgtattgaccggcggttccagtgtt
ttcgcgacatccagcgcaatacagtggctgtggctgctgcaggcgatcgagcagccgcac
cggtccgatcgcgtccggttgactgccctttctccgatcttcgggcgcaccgccgaagaa
ttggacctcgacggcgacaacgtcgtcgcggaactcgcgggtcaactgcgctcatactcc
gggttgttcgcacgcgtcgggttcgcggccgtgttcgaaagggtctccgccgaaacgaat
ctggagaagcgtgtactcgcggccccgtccggcgaacgagatttcaccgatctgcgacac
gtcgcacaacttctcggccgcgtcgccatcgaggaagcgttcgggttgagcgcattggtt
cgctggctctccgatcggatcaaggacccgacgtccgggagcgccaccgacagaagccgt
cgcctcgacagtgatgctgccgctgtacaaatcgcaaccgtgcacgccaccaaaggactc
gaattcccgatcgtctacgtcccgttcagttgggagagcgtgggcggcttcaactctccg
acgcagttgttgcacgatccggaagggcgccgcatcctcgacgtcggtgggcaggaaggc
ccggggcacaacgccagaaagactgttgcggaggctgaagaagcaggcgaagaactgcgg
ctgctgtacgtggcgctgacccgggcacagtgtcaactagtgctctggtgggcgccaagc
tacgggacctcacgctcgccactgcaccggttgatgctcggacgtacacccggcatcgcc
gaacctgctcgggtagtgaaggtgctcgacgacggtacaaccgcagcacgactcgcgacg
tggccggcagcagcttccgacgtgatctcggtggaaccagttggtccacatccgccgtcg
cccgtccagtggtccggtgcagccgcagacgtgaccgaactggccgcggcgcgtttcgat
cgagacctggacactctgtggcgtcgtacgtcgtactcggcactgaccgccggagcgcac
cacgcggtcacgagcaccgacagtgaggtagaggatcccgaaaaggacgacgagccagag
gattccgtagacgtcgggaccgtcatcccctcgccgctggaggcgttgccttcaccgatg
aacggtcttccggcgggcgccgcattcggcacgctggtgcatgaagtgctcgaggtggtg
gacactgctgcttcagacctgagagcggaactccgtatacgctgcgcggaggcggtctcg
gttcgggcggccgaggtcgactccgaagcactcgcggatgcgttgttgctggtgatgcag
actccactgggattcggaaccttggccacgatcgcgccgaaagatcgtcttcccgaactc
gatttcgaactcccgctggccggtggcgacgatccggtgtcgatgagtgtcacacttcgc
ggagtgtcggaactgttgaggcgccaccttcccccggacgacattctggcgtcgtacgcc
gaccaacttgaccgtgtcgagacgtcaccgatgcgcgggttcctgacgggcagtatcgac
gccgtcttgcggatcccgggcccgtcgttcgtgatcgtcgactacaagacaaatcggctg
ggccgcggcgatctgacggctgccaactacacgcgtgaactcatggcgacggagatgatg
cgctcgcactatcccctgcaggcgctgctgtattcggttgcgctgcatcggtatctgcgg
tggcgactgcccgactacgatccgcatcgccatctcggaggcgcgcagtatcaattcgtg
cgggggatgctcggcccggacagtccgccggaatgtggtgtattcgaatggaaaccgcct
gctcagctgacggttgaactatcggatctgctggccggtcttgatgcgtcccacacagta
ggggagaagattcgatga
DBGET
integrated database retrieval system
