Rhodococcus sp. H-CA8f: CPI83_26335
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Entry
CPI83_26335 CDS
T10533
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rhoh Rhodococcus sp. H-CA8f
Brite
KEGG Orthology (KO) [BR:
rhoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhoh03032
]
CPI83_26335
03400 DNA repair and recombination proteins [BR:
rhoh03400
]
CPI83_26335
Enzymes [BR:
rhoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CPI83_26335
DNA replication proteins [BR:
rhoh03032
]
Prokaryotic type
DNA Topoisomerases
CPI83_26335
DNA repair and recombination proteins [BR:
rhoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CPI83_26335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
ATI35190
LinkDB
All DBs
Position
complement(5667620..5670556)
Genome browser
AA seq
978 aa
AA seq
DB search
MAKADNGSGQGASGNPRRLVIVESPTKARKIAPYLGKDYVVEASVGHIRDLPRGAADVPA
KYKGESWARLGVNVDHDFEPLYVVSPEKKGKVAELKSLLKDADELFLATDPDREGEAIAW
HLLETLKPKIPVRRMVFHEITEPAIRAAAEDTRELDTDLVDAQETRRILDRLYGYEVSPV
LWKKVMPKLSAGRVQSVATRVIVQRERERMAFKSASYWDISATLDAGAEASPRSFGARLV
SVDGSRVASGRDFGADGKLKGSAVTVLDEAYARRLAEALQGVDLTVSSAEDKPYTRKPYP
PFMTSTLQQEAGRKLRFTSERAMRIAQRLYENGYITYMRTDSTTLSESAIAAARAQATEL
YGPEYVHPTPRQYTRKVKNAQEAHEAIRPAGDVFQTPGQLHSKLDSDEFKLYELIWQRTV
ASQMADARGTTLTLRISGTAGTGEDCTFSASGRTIVFAGFLKAYVESVDEEAGGQSDDAE
SRLPVLVKGQEVTATKLDPDGHSTNPPARYTEASLIKTLEELGIGRPSTYSSIIKTILDR
GYVYKRGSALVPSWVAFAVIGLLEVHFGRLVDFDFTAGMEDDLDAIAGGREQRGNWLSSF
YFGGETGAEGSVAREGGLKKMVGVNLEEIDAREVNSIRLFDDAEGREVHVRVGRFGPYLE
RMVQNPDDPEGDLISQRANLPDDLPPDELTPEYAENLFSTPQEGRKLGVDPLTGHEIVAK
EGRFGPYVTEILPEPPAEPEPDIVPVSAPEPEEISSGSTKTAVKKAAAKKAPAKKAAKKV
AGPKPRTGSLLKSMDLATITLEDALRLLSLPRVVGVDPESKEEITAQNGRYGPYLKKGTD
SRSLANEEQMFTVTLDEALKIYAEPKRRGRQASATPPLRELGVDPVSEKPMVIKDGRFGP
YVTDGETNASLRKDDDVESISDARASELLADRRARGPVKKKAAAKKAPAKKAAAKKTAAK
KAPAKKAAAKKAPAKKDS
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
gtggctaaagcggacaacggcagcggtcagggagcgtccggtaaccctcgtcgcctcgtg
atcgtcgagtcaccgaccaaggcgcgcaaaatcgctccctacctcggtaaggactacgtc
gtagaggcatcggtcggtcacattcgcgacctgccgcgcggcgcagcagacgttccggcc
aagtacaagggcgagtcatgggcccgtctcggcgtcaacgtcgatcacgacttcgagccg
ctctatgtcgtgagcccggaaaagaagggcaaggtcgccgaactcaagtctctgttgaag
gacgccgacgagctcttcctcgcaactgaccccgaccgcgagggcgaggcaatcgcctgg
catctcctcgagactctcaagcccaagattccggttcgtcgaatggtcttccacgagatc
accgagccggcaatccgtgctgccgccgaagacacccgcgaactcgacaccgacctcgtc
gatgctcaggaaacccgccgcatcctcgaccgtctctacggttacgaggtcagcccggtt
ctctggaagaaggtcatgccgaagctctcggccggccgcgtccagtcggtggccactcgc
gtcatcgtccagcgtgaacgcgagcgcatggcgttcaagtcggcgtcgtactgggacatt
tccgcgacactcgacgccggtgcggaggccagcccgcgtagtttcggtgctcgcctggtc
tccgtcgacggttcgcgtgtcgcctccggccgtgatttcggagctgacggaaagctcaag
ggcagcgcagtcaccgtgctcgacgaggcgtacgcgcgtcgtctcgcggaagcgttgcag
ggcgtcgacctcacggtttcctccgccgaggacaagccatacacgcgcaagccttacccg
ccgttcatgacgtcgactctccagcaggaagccggacgcaaacttcgtttcacgtccgag
cgcgccatgcgtatcgcgcagcgtctgtacgaaaacggctacatcacctatatgcgtacc
gactcgacgacgctctcggagtcggcgattgcagccgctcgagcgcaggccaccgagttg
tacggtccggaatacgtgcatccgacgccgcgtcagtacacccgcaaggtcaagaacgcg
caggaagcgcacgaggcgatccgccccgccggcgacgtgttccagaccccgggtcagctg
cactccaagctcgattccgacgagttcaagctgtacgaactgatctggcagcggaccgtc
gcttcgcagatggccgacgcccgcggtacgacgctgacgctccgcatctccggcacggca
ggcaccggcgaggactgcacgttctccgcttcgggtcgcaccatcgtgttcgccggcttc
ctcaaggcttacgtcgaaagtgtcgacgaagaagccggcggtcagtccgacgacgccgaa
tccaggcttccggtactggtcaagggccaggaagtcacggccaccaagctcgatccggac
gggcacagcaccaacccgcccgctcgctacacagaagccagcctgatcaagacgctcgaa
gaactcggcatcggccgtccttcgacctactcgtcgatcatcaagaccatcctcgatcgc
ggatacgtctacaaacgtggcagcgcgctggttccgtcctgggtggcgtttgccgtcatc
ggactgctcgaggtgcacttcggccggctggtcgacttcgacttcacggcaggaatggaa
gacgatctcgacgcgatcgccggcggtcgtgagcagcgtggcaactggctgagcagcttc
tacttcggcggcgagacaggcgcagagggatcggtcgcccgcgagggcgggctgaagaag
atggtcggtgtcaacctcgaggagatcgacgctcgcgaggtcaactccatccgtctcttc
gacgacgccgagggccgcgaggttcacgtgcgcgtcggccggttcggcccgtatctcgag
cgcatggttcagaacccggacgatcccgaaggcgatctgatctcgcagcgggcaaatctt
cccgacgacctgccgccggacgagctcactcccgagtacgccgagaatctgttctcgacg
cctcaagagggccgcaagctgggcgtcgacccactgacgggccacgagatcgtcgcgaag
gaaggccgcttcggtccctacgtgaccgagatcctgcccgaaccgccggccgagccggaa
ccggacatcgttcccgtctccgctcccgagccggaagaaatcagttcgggcagtaccaag
actgcggtgaagaaggccgcagccaagaaggcacccgcgaagaaggctgccaagaaggtc
gcgggccccaagccgcggacgggatcgctgctcaagtccatggatttggcgacgatcacc
ttggaagatgcgcttcgtctgctgtcgcttccgcgcgtcgtgggtgtcgaccccgaatcc
aaggaagagatcaccgcgcagaacggccgttacggcccgtacctgaagaagggcacggat
tcacgctcgctcgccaacgaagagcagatgttcaccgtcacgctcgacgaggccctcaag
atctacgccgagccgaagcgtcgtgggcgtcaggcgtcggcaacgcctccgttgcgtgag
ttgggcgtcgatccggtcagcgagaagccgatggtgatcaaggacggccgtttcggtccg
tacgtcaccgacggcgagaccaacgccagcctccgcaaggacgacgacgtcgaatccatt
tctgatgctcgtgcgtcggagttgctggctgatcgtcgtgcgcgcggcccggtcaagaag
aaggctgctgccaagaaggctccggcaaagaaggccgctgccaagaaaacagccgcaaaa
aaggccccggccaagaaggctgccgccaagaaggctcccgcgaagaaggactcgtaa
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