Rhodopirellula sp. P2: PSR62_04945
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Entry
PSR62_04945 CDS
T10699
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rhoi Rhodopirellula sp. P2
Pathway
rhoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSR62_04945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhoi03019
]
PSR62_04945
03400 DNA repair and recombination proteins [BR:
rhoi03400
]
PSR62_04945
Enzymes [BR:
rhoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSR62_04945
Messenger RNA biogenesis [BR:
rhoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSR62_04945
DNA repair and recombination proteins [BR:
rhoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSR62_04945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WDQ17899
LinkDB
All DBs
Position
1406888..1408876
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AA seq
662 aa
AA seq
DB search
MVETGTDADDALPDSSLRSTRWAHAERVLKESFGFERLLPPQRKVMERLFDGRNVVAVMP
TGSGKSLCYQLVSQCLPHLTVVVSPLVALMKDQGDSLKRRGIEVARLDHSASPQELRLDL
QRVRSGHCKLLYVSPERFFNERFRAVLGETPISMLAVDEAHCMSEWGHHFRPDYLRLPDV
VEEHSIPQVLALTATAPTRVVREIRSAFGLERTDVVKLPTHRSNLHLQCTQVTSRERDER
LLEQLRAAAKSRTKGVTIVYVTRRRTAEQLAESLNEAGLSAMAYHAGLTSEQRNSIQHWF
LESNHGILVGTVAFGMGVDKANVRRVIHYNPSSSLEGYSQEIGRGGRDGKATQCQTWLVP
EDQVAIRNLPCSDWPTKQSVERLLDRLIGQPDSFYLALGKLAWEVNLSVGVLGTFMIQLR
QRGCLELLPARYDVYRVKPRCEISEIASRSGTIDPEAAEAIVASLVKAKRAYRVNLVLAT
RQYGVSRIRLVAALEELALSGIIELESSELMHGYRWVERIARPAATVKHLLKRFDTSMDA
TQQRIDSMMGFLACSECLPVSMAAHFGSRRSRPCGKCSACRGEGPWDTQLNPPDSIGDSA
SKAMADAMAAYPDLFSDPIDRAKFLCGLYTPAFMRFRVNRHFGFGVCESVPFTTVLAAMR
AN
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggtagaaacgggcacggacgccgacgacgctttgcctgattcaagcttgcgttccacc
cgctgggctcacgccgagcgggtcctgaaggaatcgtttgggttcgagcgtttgctgccg
cctcaacggaaggtcatggaacgactgtttgacggtcgcaacgtggtcgccgtgatgcca
acgggcagtggcaaaagcttgtgctaccaattggtcagccagtgtttgccgcatctgaca
gtcgtggtgtcgcccttggttgcgttgatgaaagaccaaggtgactcgctgaaacggcgg
ggcatcgaggtcgcgaggctggaccattccgcctcgcctcaagagctgcgtttggacttg
caacgtgttcgttcggggcactgcaagttgctctacgtttcccctgaacgttttttcaac
gagcgttttcgtgcggtcctgggggaaacaccgatctcgatgttggcggtcgacgaagcc
cattgcatgagcgagtgggggcaccactttcgtcccgattacctgcggttgccggacgtg
gtggaggagcacagtatcccgcaagtgctggcgttgaccgcgacggcgccgacccgagtc
gtgcgcgaaattcgatccgcgtttgggttggaacgaaccgatgttgtgaagctgccgaca
catcgttcgaatttgcacctgcagtgcacgcaggtgacctctcgagagcgcgatgaacgg
ttgctggaacagcttcgggcggcggccaagtcccgcaccaagggcgtcacgattgtttac
gtcactcgtcgtcgaaccgccgagcaactggcagaatcgctgaacgaagcaggtctttcc
gcgatggcgtaccacgcgggattgaccagcgaacaacgcaattccattcagcattggttt
ctggaatccaaccacggcatcttggtcggcaccgtggcctttgggatgggcgtggacaaa
gccaatgtgcgccgagtgattcactacaacccatcctcttcgttggaagggtacagccaa
gagattggtcgtggcggtcgggatggcaaagcgacgcagtgtcagacttggttggttccc
gaagaccaagtcgcgattcgtaatttgccatgcagtgactggccgacgaagcagtccgtg
gaacgtttgctggatcgattgatcggccaaccggattcgttttacttggcgcttggcaaa
ctggcttgggaagtgaatttgtcggtcggtgtgctggggacgttcatgattcagttgcga
caacgtggatgcctggaactgttgcccgcgcggtacgacgtctaccgagtcaaaccgagg
tgcgagatttcggaaattgcttcgcggagtggcacgattgatccggaggctgcggaagcg
attgtggcttcgttggtcaaagccaagcgggcgtatcgggtcaacttggttctggcgacg
cggcaatatggggtgtctcggattcgtctggtggcagcgctcgaggagttggctttgtcc
gggatcattgaattggaatcgtccgagttgatgcacgggtaccgctgggtcgagcgaatt
gctcggcccgcggcgacggtgaagcatttgctgaaacgctttgacacgtcgatggatgcg
acgcagcagcgaatcgattcgatgatgggtttcctggcctgcagcgagtgtttgccggtc
tcgatggccgctcatttcggttcgcgtcgctcgcggccctgtgggaaatgttcagcctgt
cgtggcgaggggccgtgggacacccagctgaatccacccgattcgatcggcgattcggcc
tccaaagcgatggcagatgcgatggcggcgtatcccgacctcttttcagatccgatcgat
cgggccaaattcctgtgtggcttgtacacgcccgctttcatgcgttttcgtgtgaaccgg
catttcggcttcggtgtctgtgaatccgttcccttcacgaccgttttggcggcaatgcga
gcgaactga
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