Rhodopirellula sp. P2: PSR62_07285
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Entry
PSR62_07285 CDS
T10699
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhoi Rhodopirellula sp. P2
Pathway
rhoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSR62_07285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhoi03019
]
PSR62_07285
03009 Ribosome biogenesis [BR:
rhoi03009
]
PSR62_07285
Enzymes [BR:
rhoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSR62_07285
Messenger RNA biogenesis [BR:
rhoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSR62_07285
Ribosome biogenesis [BR:
rhoi03009
]
Prokaryotic type
rRNA helicases
PSR62_07285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WDQ18341
LinkDB
All DBs
Position
2068016..2070793
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AA seq
925 aa
AA seq
DB search
MSDHPASKETLVDPTSELNSQEQTLDTFEMSTTETVVDLSAQWATQYANAVIDPSEVASP
TVDESLLYYQADCTEETSDAPVEVQPELSVEPVQAEVAELEQPIQDPPALQEQPVVSEPE
VVAESQPEPQPVVQSEPVVSQQPLEPVAQPEPVAQPEPVAQPEAVAQPEPIVQSEPVAQS
EPVVQQEPVAQQEPVAQQEPVAQQEIVEEQQPAASPEAIVQPEAVVSQVPVAEPKPVAQP
APVVEAAPVAEAVAVPKPELDVKPVEPVAQPVASVREETNPSAPASESAKAEVSPQSNEP
TEPLFSDLKLRKEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALP
ILSRVDVRNRRPQVLVLAPTRELAIQVARSFTKYGADLDGFQVAAIYGGQDYEPQLRQLR
RGVQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKTPDGRQV
ALFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKTDALARLLEVE
DTDGVIVFTKTKDSTLSVAEKLSQQGFSAVALNGDMPQKVRERTIDQLKRGQLDVLVATD
VAARGLDVPRISHVFNYDLPHDSESYVHRIGRTGRAGRSGEAIIFLTNAQRRQLRFIENT
TKQPIEVVDLPTVADINNARVRRFKQRITDVSADQDLTVFKDMIAQYAEETGKPMDMIAA
ALAGMSQDGRPFLLKERPKKQRERPERDNSRGRDSFDSNDRSGNRGSFGDDRSRRPKGRP
LTPVKEGMTRYRLDVGWQDGVKPGNIVGAVANEAGIDGEFIGPINIRDSHTLIDLPEGMP
SDIYQTLRKTWVAGKRLNLEEAGDVVDDNEGDGARSNFRKSKFSGGGDSRGKSFSGGKRS
FANKSRNNGSTAPSAKRGKKKFKPS
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcatcccgcttccaaggaaacgttggtcgatcccacgtccgagttgaactcg
caagaacaaactctggacacgtttgagatgtcgaccacggagactgtggtcgatctttca
gcccagtgggccacccagtatgccaacgctgtgatcgatccgagcgaagttgcttcgcca
accgtcgacgaatcactgttgtactaccaagccgattgcaccgaagaaacttcggatgca
cccgtggaggtccaacctgaattgtctgtcgagcccgttcaagcggaagtcgctgaactg
gaacaaccgattcaggatccacccgctctgcaagagcagccggttgtctcggagcccgaa
gtggtggctgaatcgcaacccgagccacaacccgtggtccaatccgagccagtggtttcg
caacagccactcgagcctgttgcacagcctgagcctgttgcacagcctgagcctgttgca
cagcctgaggccgtcgcacagcccgagccgatcgttcagtcggaacctgttgctcagtcg
gaacctgttgttcagcaagaacctgtcgctcagcaagagcctgtcgctcagcaagaacct
gttgctcagcaagaaatcgtggaagagcaacagccagctgcatcgccagaagcgatcgtt
caaccagaagcggtcgtttcgcaagtgcccgtggcagaacccaaacctgttgcacagcca
gcacctgtcgtcgaggcagcacctgtcgccgaagcagtggctgttcccaagccagaattg
gacgtcaaacccgttgagccagtcgctcagccagtcgcgtctgttcgagaagaaacgaac
ccgtccgctccggccagtgaaagtgcgaaggcggaagtgtctccgcagtcaaacgaaccc
accgagcccttgttcagcgacctgaaattgcgcaaagaagtgcaaaaggcagtggcggct
tctgggtacgacaaacccacgccaatccaagctgagatcattccgtacatgctggatggt
cgcgacgttttggctcagtcgcaaactggtaccggcaagacagccgccttcgcactgccg
atcttgtcgcgagtggacgttcgcaatcgtcgtccgcaggtgctcgtgttggcacccacg
cgagaattggcgattcaagtcgctcggtcgttcaccaagtacggtgccgatctggacggt
ttccaagtcgcagccatctacggtggtcaagattacgaaccccagttgcgtcaactccgg
cgtggtgtccaagtggtggttgggacacccggtcgagtgatcgatcacgtcaagcgtggc
acactggaccttggttcgctcgattgcctcgtgctcgacgaagccgacgagatgctcaac
atgggattcttggaggacgtgcaattcgtccttgagaaaactcccgacggacgccaagtt
gctttgttctcagcgacgttgcccaagcccattcgcaagatcgcggatgagtacttgaac
gatcccgctcggatcacgatcaaatccaagaccatcacggcagcatcggttcgccagcgg
gcactgtttgtctcaccacgcgacaagaccgacgccctggctcgcctcttggaagtggaa
gacaccgacggcgtcatcgtcttcaccaagacgaaggattccaccctcagtgttgctgag
aaattgagccagcaaggtttctccgccgttgcgctcaacggcgacatgccgcaaaaagtt
cgtgaacggaccattgatcagctcaaacggggacaactcgacgtgttggttgccaccgat
gtggccgctcgaggtttggacgttccgcgaatcagtcacgtgttcaactatgatttgccg
catgacagcgaatcgtatgtgcaccgcatcgggcgaacaggacgtgccggacgcagtgga
gaagcgatcatcttcctgaccaacgctcagcgtcgtcagcttcgcttcatcgagaacacg
accaagcagcccattgaagtcgttgatcttccgacggtggccgacatcaacaacgctcgc
gtgcgtcgattcaagcaacgcatcaccgatgtctctgccgaccaagatctgactgtcttc
aaagacatgatcgctcagtacgccgaggaaacgggcaaaccgatggacatgatcgccgcc
gcgttggccggaatgagccaagacggacgtccgttcttgttgaaggaacgcccaaagaaa
caacgtgaacgtcccgagcgagacaattctcgcgggcgggactcattcgattcgaatgac
cgatctggcaaccgtggatccttcggcgacgatcgatctcgtcgtcccaaaggtcgtcca
ctgacgcccgtcaaagaaggcatgacccgctatcgtctcgatgtgggttggcaagacgga
gtcaaacctggcaacatcgtcggtgcggtcgccaacgaagctggcatcgatggcgagttc
atcgggccaatcaacattcgtgattcgcacacgctgatcgatctgcccgaaggcatgcca
tcggacatctaccaaacgcttcgtaaaacgtgggtcgccggaaaacggttgaacctcgaa
gaagccggcgatgtggtggatgacaacgaaggcgacggtgctcgcagtaacttccgcaaa
agcaagttctccggcggcggagattcgcgtggcaaaagtttcagcggaggaaagcgttcg
ttcgccaacaagtcccgcaacaacggaagcaccgctccgagtgcgaaacgcggcaagaag
aaattcaaaccttcttga
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