Rhodopirellula sp. P2: PSR62_08950
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Entry
PSR62_08950 CDS
T10699
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhoi Rhodopirellula sp. P2
Pathway
rhoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSR62_08950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhoi03019
]
PSR62_08950
03009 Ribosome biogenesis [BR:
rhoi03009
]
PSR62_08950
Enzymes [BR:
rhoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSR62_08950
Messenger RNA biogenesis [BR:
rhoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSR62_08950
Ribosome biogenesis [BR:
rhoi03009
]
Prokaryotic type
rRNA helicases
PSR62_08950
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF7464
Motif
Other DBs
NCBI-ProteinID:
WDQ18655
LinkDB
All DBs
Position
complement(2532423..2533772)
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AA seq
449 aa
AA seq
DB search
MRNQHQPRAGRGARPARFEEPIDTIALLESVGPVETPPEMDSFDELDLSPIMRESVKAAG
FTAPSPIQAALIPHALNGRDVIGQARTGTGKTAAFSIPILEQLDSLEDCRDPQAIVIVPT
RELADQVAAEAERLARGVPTEIAVLSGGKNMNRQLRQLENGTQLVVGTPGRVHDHLQRGT
LRTDKVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTLLLSATLPPVVRRLAESYMQE
PIVIDCCRDEMSVDTIEQRYFTIAQDDKVRLLESLLKREKPEQAIIFCRTKRGTDRLHRK
LSQEYGGACGAIHGDLQQRERDRVLQKLRDGNLKFLVATDVVGRGIDISTISHIVNFDVP
QDCDDYVHRVGRTGRMGRDGVAYTFVVPGEGDILTSIEQRINKLLIRDQMDGFESPAEKA
AAVAAAAPEPEKELRRTLNPMTRKRPRRR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgagaaatcaacaccaaccgcgtgcaggacgcggagcacgccccgcccgcttcgaagaa
ccgatcgacacgatcgctctgctggaatccgttggaccggtggaaacaccgccggaaatg
gactcctttgatgagctggatttgtctccgatcatgcgtgaatcggtgaaagcagctgga
ttcacagcgccatcgcccatccaagccgccttgatcccgcatgccctcaatggcagagac
gtgattggccaggctcgcacaggcaccggtaaaaccgcggccttcagcattccaatcctt
gagcagctcgattcgctggaagattgtcgcgacccgcaagcaattgtgatcgtcccgact
cgcgaattggccgatcaagtcgccgccgaggccgaaaggctggcccgcggggttccgacc
gaaatagccgtgctctccggcggaaaaaacatgaaccgccagcttcggcagctggaaaac
ggcacgcagctcgtcgtcgggactcccggccgagtgcatgaccaccttcaacgaggcacc
ctccgcaccgacaaagtctggtgtgtggtcctggatgaagccgaccggatgctggacatc
ggcttccggcctcaaattgagcggatcatgcgaaagtgcccccgaaatcggcagaccttg
ctgctttcggccactctgccaccggtcgttcgacgactggccgaaagctacatgcaagaa
ccaatcgtgatcgattgctgccgcgacgaaatgtcggtcgacacaattgaacagcgatac
ttcaccatcgctcaagacgacaaagtcaggttgctggagtcgttgctgaaacgcgaaaaa
cctgaacaggcgatcatcttctgccgcaccaagcgggggaccgaccgactgcaccggaag
ctttcgcaggaatacggtggcgcttgcggagcaattcacggcgatttgcaacaacgggaa
cgcgatcgggtgcttcaaaagcttcgcgatggaaatctgaagtttttggtggcgacggat
gtcgttggccgcggaattgacatcagcacaatctcacacatcgtcaatttcgatgtcccg
caggattgcgacgactatgtccaccgcgttggccgaaccggtcgcatgggccgagatggc
gttgcgtacaccttcgtcgtgccaggcgaaggtgacattctgaccagcattgagcaacgg
atcaacaaattgctgattcgagatcaaatggatggctttgaatcgcctgctgagaaagca
gccgcagttgcggcagctgcgcccgaaccagagaaagaattgcggcgcaccctcaatcct
atgacacgaaagcgccctcgccggcgctga
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