Rhodopirellula sp. P2: PSR62_17665
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Entry
PSR62_17665 CDS
T10699
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhoi Rhodopirellula sp. P2
Pathway
rhoi03030
DNA replication
rhoi03430
Mismatch repair
rhoi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSR62_17665 (dnaE)
03430 Mismatch repair
PSR62_17665 (dnaE)
03440 Homologous recombination
PSR62_17665 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhoi03032
]
PSR62_17665 (dnaE)
03400 DNA repair and recombination proteins [BR:
rhoi03400
]
PSR62_17665 (dnaE)
Enzymes [BR:
rhoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSR62_17665 (dnaE)
DNA replication proteins [BR:
rhoi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSR62_17665 (dnaE)
DNA repair and recombination proteins [BR:
rhoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSR62_17665 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
PHP_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WDQ15460
LinkDB
All DBs
Position
4978100..4981699
Genome browser
AA seq
1199 aa
AA seq
DB search
MSDTIIAPEMKIEAATEMPDAKPFVHLHCHSHYSLLDGAGDIGKLVNRAVEHGMNALALT
DHGNLHGALEFYRKAKDAGINPIIGYEAYIAPGSRFDKGGARSSKAASYHLTLLAQNRTG
FKNLIKLASAASLEGFYFKPRIDKEILEKHSEGIVCLSGCVSSEFSRAILKGIETKEHEE
EAKKIAGWFHKVFGDRYFIEIMNNDVDIQRTQLEGAVDIANKMGLPLVATSDCHYVNQED
AEAQDIMLCINTGRFRTDNTRMKMENDQFFLRSPQQMYEKFPGLEDAVGRSQQIADTVDI
ELEFNKYFFPSFPCPDELTPLDYLRKLCEQGLMERYEGDDERIVDGKLSDEVMARLDREL
GVIEKLNYPTYFLIVWDFVNHARDVGISATARGSGVGAIVCYALYMSHVCPLRYDLLFER
FLDESRTEPPDIDIDFEKERRLEVIDYVKERYGSEMVCQIGTFGTLAAKAAIKDTGRALG
IPLSRVNQITELVPDELKITIAKSLDKSADLKMIYDGDPEIRELLDLAMKIEGLARNVGT
HAAAVVIADQPLTEYVPLGRVPGKQDVITQWAMVDVEASGLLKMDFLGLRNLTIMSRTVK
LVEQTTGKTIDPLKFPLDDKPSYALLQRGETKGVFQLESGGIRDLLQRMKPDTFNDIIAT
AALYRPGPLEGGMVDDYVNIKHGRQQPEYKHPVLKEILEETNSIMVYQEQVMRILNRLGD
VPLAKAYTCIKAISKKKQSLIDANHDVFIAGSIRNGLAEKDAEDIWNLIVKFAGYGFNKS
HSTAYALIAYQTAYLKAHYPVEFMAALLSSDISGRNFKRKDALIEHMEDCDRMGIEVLPP
NVNLSDADFGVFEGKIPFALSAIKACGGSTAISIEEERKKNGPYKDIFDFCERVDPHDCN
RSAIETLIKAGAFDCFGAKRSQLASVLERAMQAGAKVQADKKTGQASFFDAFDEDEEEDS
DGDSSAATPLPDIEEWPDREKLLAEKEVLGYYLDSHPLAEFENKLATFRTHTTESMADCK
DRDEVIVGGMISSIKIAHTKNPKPGAPSKYANFDLEDMAGSVRCICWPKGFAVCGERIQP
DAVVLAKAKVDRRGGGDEINLIIDELTPLDELDSRYTHGIRIRLDEAEHDEKTVSNVREI
VRGYPGNKDLLLAMQLCEGETVHFKADKFRVDITPQLRERLDDLLGTGHYKLLMSKPQR
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatacgattatcgccccagaaatgaaaattgaagcggcgacggaaatgccggac
gccaaaccgtttgttcacctgcattgccacagccactacagcttgctcgatggggccggt
gatatcggcaagttggtcaaccgcgccgttgaacacgggatgaatgcgctggcgttgacc
gaccacggcaacttgcacggggcgcttgagttctatcgcaaggcgaaggacgcgggcatc
aatccgatcatcggttatgaagcttacatcgcaccggggagtcggtttgacaaaggcggt
gcccgcagcagcaaagcggccagctatcacttgactctgttggcacaaaaccgaaccggt
ttcaaaaacctgatcaagctcgcctcggccgcttcgctagaaggcttctacttcaagcct
cgaatcgacaaagaaatcctcgagaagcacagcgaaggcatcgtttgcttgtccggttgc
gtcagcagcgaattcagccgcgcgattctgaagggaatcgaaaccaaagaacacgaagaa
gaagccaagaagatcgcgggctggtttcacaaagtcttcggcgatcgttacttcatcgag
atcatgaacaatgatgtcgacatccagcgcacccaactcgaaggtgcggtggacatcgcc
aacaagatgggtctgcctttggtcgcgaccagtgattgccactacgtcaatcaagaagac
gcggaagcccaggacatcatgttgtgcatcaacaccgggcgattccgcacggacaacacg
cgaatgaagatggagaacgaccagttctttcttcgcagtccacaacagatgtacgagaag
tttccgggactggaagacgcggtcggtcgtagccagcagatcgctgacacggtggacatt
gaactcgaattcaacaagtactttttccccagcttcccctgccctgatgaactgacgccg
ctggactacctgcggaagttgtgcgaacagggactgatggaacgttacgagggcgatgac
gaacgcatcgtcgacggcaagctttccgacgaggtcatggcccgcctcgatcgcgaattg
ggcgtgatcgaaaagctcaactacccaacgtacttcttgatcgtgtgggacttcgtcaac
cacgctcgcgacgtcggcatcagcgcgaccgctcggggttccggggtgggtgcgatcgtg
tgctacgcgctgtacatgtctcacgtttgtccgctgcgttatgacttgttgttcgaaaga
ttcctcgatgaatctcgaaccgagccacccgatatcgacatcgacttcgaaaaggaacgt
cgactcgaagtcattgactatgtgaaagagcgttacggcagcgaaatggtctgccagatt
ggaacgttcggtacgctggcagccaaggcagccatcaaggacaccgggcgtgcgcttgga
atcccgctgtctcgcgtcaaccaaatcaccgagttggtcccggacgagctgaagatcacc
atcgcgaagtcgctcgacaagagcgctgacctgaagatgatctacgacggcgacccggag
atccgcgagttgctcgacctggcgatgaagatcgagggactggctcgcaacgttggcacg
cacgccgcggcggtggtcatcgccgaccaaccgctgaccgagtatgtgccgctggggcgg
gtgcctggaaagcaggatgtgatcacccaatgggcgatggtggatgttgaagcatccggg
ttgctcaagatggatttcctcgggcttcgcaacctgacaatcatgtcgcgaacggtgaag
ttggtcgagcaaacgaccggcaaaaccattgaccctttgaagttcccattggacgacaaa
ccctcctatgccctgctgcaacgcggggaaaccaagggcgtcttccagctcgaatcaggc
ggcattcgcgatctgcttcagcgaatgaagcccgacacgttcaacgacatcatcgcgacc
gccgccttgtatcgccccggtccgctggaaggcgggatggtcgacgactacgtcaacatc
aaacacggtcggcaacaaccggagtacaaacacccggtcttgaaagagatcttggaagag
accaactcgatcatggtctaccaagaacaggtgatgcggattctcaaccgcctcggggac
gtgccgctggccaaagcgtacacgtgcatcaaggcgatcagtaaaaagaagcagtctttg
atcgatgccaaccacgatgtcttcatcgctggttcgatccgcaatgggttggcagaaaaa
gacgcggaagacatttggaatctgatcgtcaagttcgctggctacgggttcaacaagtcg
cactccactgcgtacgcgttgattgcctaccaaaccgcgtatttgaaagcccactacccc
gtcgagttcatggcggcgttgttgtccagcgacatctcgggccgaaacttcaaacgcaaa
gatgctctgatcgagcacatggaggactgcgatcggatgggcattgaggtgttgccaccc
aatgtcaatctatctgacgcggactttggagtgtttgagggcaagatccccttcgctctg
tctgcgatcaaggcctgtggtggctccaccgcgatcagcattgaagaggaacgcaaaaag
aacgggccctacaaagacatctttgatttttgtgaacgagtcgacccgcacgactgcaat
cgcagtgcgatcgaaacgttgatcaaagccggtgcctttgattgcttcggtgccaaacga
agtcaattggcctccgtgctcgaacgggccatgcaggccggtgcgaaagtacaagccgac
aaaaaaaccgggcaagccagcttcttcgacgccttcgatgaagacgaagaggaggactcc
gacggtgattccagtgcggcaacaccgttgccggacatcgaagaatggcctgatcgcgaa
aaactgttggctgaaaaagaagttctgggctactacttggacagtcacccgttggccgag
tttgaaaacaagctggcgacgttccgtacccacaccaccgaatccatggcggattgcaaa
gaccgcgatgaagtcatcgtgggcggaatgatcagcagcatcaaaattgctcacacgaag
aaccccaagccaggggcgcccagcaagtacgcgaactttgacttggaagacatggccggc
agcgtacgctgcatctgctggccgaaaggtttcgccgtgtgtggcgaacgcatccaaccc
gatgccgtcgttctggcaaaggccaaggtcgaccgtcgcggcggtggcgatgaaatcaat
ctgatcatcgacgaattgacaccgctggacgaactggattcacgctacacgcatggcatc
cgcattcgtctggacgaggccgaacacgatgagaaaacggtttccaacgttcgcgaaatc
gtccgcggctacccaggcaacaaggatttgttgttggcgatgcagttgtgcgaaggcgag
acggtgcacttcaaggccgataaattccgcgtcgacatcacccctcaactccgcgagcgg
ctggacgacttgctcggaaccgggcactacaagttgctgatgagcaaaccgcaacgctga
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