Rhodopirellula sp. P2: PSR62_22875
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Entry
PSR62_22875 CDS
T10699
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rhoi Rhodopirellula sp. P2
Pathway
rhoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSR62_22875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhoi03019
]
PSR62_22875
03400 DNA repair and recombination proteins [BR:
rhoi03400
]
PSR62_22875
Enzymes [BR:
rhoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSR62_22875
Messenger RNA biogenesis [BR:
rhoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSR62_22875
DNA repair and recombination proteins [BR:
rhoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSR62_22875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
DIP2311-like_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
WDQ16443
LinkDB
All DBs
Position
complement(6497562..6499016)
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AA seq
484 aa
AA seq
DB search
MDLHPHLDRCFGFQSFRHGQREACESIVAGKDTIVLMPTGAGKSLCYQLPGILRDGVTLV
VSPLISLAKDQAEHLKEAGQPTVVLNSTRTKKQIESARSKIAAGKVKFVLTTPERLQKTD
ICELLAGVGVGLMVVDEAHCVSQWGHDFRPDYLCLPSIRERLGNPPLAALTATASERTLD
EVRCSLRMNDPTIVRTGIDRPNLRIEVVRCYSAEDKLKQLHRALEIEGLLERTEPAIVYC
GTTKTADQLAKSFGGLCYHGKLRKAERAAAQEEFMNGGPSVMFATNAFGLGIDKQDLRQV
IHVELPGSLESYYQEMGRAGRDGKRSRCTLLYDPADVDLRKMFAGGMMAASKIMTAHHTL
VRGVHELGEDGQVALSKLAPISPLGRVTLKNCFQLLSSRGIVAPAGRGRWRLIVDELEHR
VADRLEEATRVRSEDRQVALREMVEFAESSKCRWELLREHFGVSETTNADCLCDQCGAVA
VASA
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggatctccaccctcacctcgatcgttgcttcgggtttcaatcctttcgtcacggtcaa
cgcgaggcgtgcgagtcgattgtggctggcaaggacacgattgtgttgatgccaaccgga
gcagggaaaagcctgtgctatcaacttcccgggatcctccgcgatggggtgacgttggtc
gtcagcccgttgatttcgcttgccaaagatcaagcggaacatttgaaagaggctggtcag
ccaaccgtggtgctcaacagcacgcgtacaaagaagcaaattgagtccgcccggtcaaag
attgccgcgggaaaggtcaagttcgttctcacgacaccggaacgattgcagaaaaccgac
atctgcgaattgctcgcgggtgtgggagttggattgatggtggtcgacgaggcgcactgt
gttagccaatgggggcacgattttcgtccagattatctgtgcttgccatccattcgggag
cggttggggaatccgccgttggctgcgctcaccgcgaccgcatcggaacgaacgctggat
gaggtccggtgctcgctgcgtatgaacgatcccaccattgttcgaactggaatcgaccgg
cccaacctgcggatcgaagttgttcgttgctattcggcggaagacaaactgaaacagttg
catcgtgcgctcgagatcgaaggtctgctggaacgcaccgagccggcgattgtctattgc
ggaacgaccaagacggcggaccagctggcgaagtccttcggtggattgtgctaccacggc
aaactgcgaaaggctgaacgtgctgccgctcaagaggagttcatgaacggggggccaagt
gtgatgtttgcgaccaacgcgtttgggctgggcatcgacaagcaagatctacgtcaagtc
attcatgtcgagttgccaggttcgttggagtcgtactaccaagagatggggcgagcgggg
agggatggcaagcgatcgcgttgcacgctgttgtacgatcccgcagatgtggacctgcga
aaaatgtttgcgggcgggatgatggcggcgagcaagatcatgacggcgcatcacaccttg
gttcgcggcgtccacgagctgggcgaagatggccaggtggcgttgtcgaagctggcaccg
atcagtccgctcggccgcgtcaccttgaagaactgttttcagttgttgtcttctcggggc
atcgtcgctccggccggacggggaagatggcgtttgatcgtggacgagcttgagcaccgt
gtcgcggatcgcttggaggaagcgactcgagtgagatccgaggatcgtcaggtggccttg
cgtgagatggtcgagtttgccgagtcatcgaagtgtcgttgggaattgctccgtgagcat
ttcggcgtcagcgaaacgacgaacgcggattgtctttgtgatcagtgcggagccgtcgcg
gttgcgagtgcgtga
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