KEGG   Rhodococcus sp. JVH1: JVH1_03790
Entry
JVH1_03790        CDS       T10360                                 
Name
(GenBank) HU family DNA-binding protein
  KO
K03530  DNA-binding protein HU-beta
Organism
rhoj  Rhodococcus sp. JVH1
Brite
KEGG Orthology (KO) [BR:rhoj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rhoj03032]
    JVH1_03790
   03036 Chromosome and associated proteins [BR:rhoj03036]
    JVH1_03790
   03400 DNA repair and recombination proteins [BR:rhoj03400]
    JVH1_03790
DNA replication proteins [BR:rhoj03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    JVH1_03790
Chromosome and associated proteins [BR:rhoj03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    JVH1_03790
DNA repair and recombination proteins [BR:rhoj03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      JVH1_03790
SSDB
Motif
Pfam: Bac_DNA_binding HC2 HU-CCDC81_euk_2 HU-CCDC81_bac_2 HU-HIG
Other DBs
NCBI-ProteinID: XEM87453
LinkDB
Position
1:complement(800684..801376)
AA seq 230 aa
MNKAELIDVLTEKLGTDRRTATEAVEHVVDTIVRAVHRGDSVTITGFGVFEQRRRAARVA
RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQKLPATGPAVKRGAAAPATKAAAKKAAA
KKTAAKKTAAKKAAPAKTTAAKKTAAKKAPAKTTAAKKTVAKKVAPAKTAAKKTAAKKAP
AKTTAAKKTVAKKVAPAKTAAKKTAAKKAPAKTTAAKKTAAKKAPAKRAK
NT seq 693 nt   +upstreamnt  +downstreamnt
atgaataaggcagagctcatcgatgttctgaccgagaaactgggcacggacaggcgcacg
gcaacggaagctgtcgagcatgtcgtggacacgatcgtccgggcagtgcaccgcggcgac
agcgtgaccatcaccggtttcggcgtcttcgagcagcgtcgtcgcgcagcacgtgtcgca
cgcaacccgcgcacgggtgagaccgtcaaggtcaagccgacgtcggtgccggcgttccgt
ccgggcgctcagttcaaggcggttatcgctggcggccagaagcttccggccaccggtccg
gcagtcaagcgcggcgcagcggcgcccgccaccaaggctgccgccaagaaggctgctgca
aagaagacggctgccaagaagaccgcagccaagaaggcggccccggccaagaccacagcc
gcgaagaagaccgcagccaagaaggctccggccaagaccacggccgcgaagaagaccgtg
gcgaagaaggtggctccggccaagactgcagccaagaagactgcagccaagaaggctccg
gccaagaccacggctgcgaagaagaccgtggcgaagaaggtggctccggccaagactgca
gccaagaagactgcagccaagaaggctccggccaagaccacggctgccaagaagaccgca
gcaaagaaggctcccgcgaagcgcgccaagtaa

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