Rhodococcus sp. JVH1: JVH1_04395
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Entry
JVH1_04395 CDS
T10360
Name
(GenBank) ATP-dependent DNA helicase UvrD2
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhoj Rhodococcus sp. JVH1
Pathway
rhoj03420
Nucleotide excision repair
rhoj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhoj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JVH1_04395
03430 Mismatch repair
JVH1_04395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhoj03400
]
JVH1_04395
Enzymes [BR:
rhoj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JVH1_04395
DNA repair and recombination proteins [BR:
rhoj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JVH1_04395
MMR (mismatch excision repair)
Other MMR factors
JVH1_04395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
HRDC
UvrD_C_2
AAA_30
ORC-CDC6-like
Motif
Other DBs
NCBI-ProteinID:
XEM93749
LinkDB
All DBs
Position
1:complement(921816..923954)
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AA seq
712 aa
AA seq
DB search
MMDAMSAAGAAEVTSTGLDPEQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVASGHV
AAGQVLAVTFTARAAGEMRGRLRSLGIGDGGAQVQARTFHAAALRQLRYFWPQVIGDTEW
RLLDRKFAVVSSAAGRVGLSTSTESVRDLASEIEWAKASLIAPEDYPRAVAKLRREAPVD
AAKVAEVYHGYEQLKARGQDGMLLDFDDLLLHTAAALEEHSAVAEEFRDRYRCFVVDEYQ
DVTPLQQRVLDAWLGERDDLTVVGDANQTIYSFTGATPNYLLDFSRRFPEATVVRLERDY
RSTPEVVSMANRVIGAARGRIAGTRLQLIGQRDSGPEPSFVEFDDEPAEAAGVARTIKRL
IASGTPAAEIAVLYRINAQSEVHEQALTKLDIPYQVRGGEGFFTRTEVRQAVAALRQAAG
RDDLPDAVGADLVTLVRAVLVPLGLTDAEPAGAQARERWSSLSALVALTEEQLTQDPELT
LDALLRELSLRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLTDGTLPIQHVLGDSNS
APDEAAVEEERRLLYVGVTRAREHLQMSWALSRNEGGRKSRRRSRFLHGLIPEDSPASRI
AAPAKSTKKRPRCRLCGKQLIGTTATMLGRCEGCPSNVDVELLESLRSWRLEKSRELKVP
AYVVFSDNTLTALAEQRPQDDRGLVAIPGIGAKKLEQFGEDVLGVIKGSGSP
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgatggacgccatgtcagcagccggcgcagcagaggtgacgagtaccggtctcgatccc
gaacagtccgcagcggtactcgctccccggggcccggtgtgtgtgctggcgggggccgga
acagggaagacccggaccatcacccggcgtatcgcgcacctcgtggccagtgggcacgtc
gccgcggggcaggtgctggcggtcacgttcacggctcgcgcggcgggcgagatgcgcggc
cggctgcgcagcctcgggatcggcgacgggggagcgcaggttcaggcgcgcacgttccac
gccgccgcactgcgacagctgaggtacttctggccgcaggtgatcggcgacacggaatgg
cggctgctggaccgcaagttcgcggtcgtgtcgtccgccgccggacgggtcgggttgtcc
accagcacggagagcgtccgcgacctggcgagcgagatcgagtgggccaaggcctcgctg
atcgcgccggaggactacccgcgtgcggtggccaagttacgcagggaggcgccggtcgac
gccgcgaaggtcgccgaggtctatcacggctacgagcagctcaaggcccgcggccaggac
gggatgctcctcgatttcgacgatctcctgctccacacggcggcggcgctcgaggagcat
tcggctgtcgccgaggagttccgcgaccggtaccgatgcttcgtcgtggacgagtaccag
gacgtcaccccgctacagcagcgtgtcctcgacgcctggctcggggagcgggacgacctc
accgtcgtcggtgacgccaaccagaccatctactcgttcaccggcgccacacccaactac
ctgctcgacttctcgcgccggttccccgaggccaccgtcgtgcgcctcgagcgcgactac
cgttcgacccccgaggtcgtgtcgatggcgaaccgggtgatcggagcggcccgcggcagg
atcgcgggcacccgtctgcagctgatcgggcaacgcgactccggaccggagccgagtttc
gtcgagttcgacgacgagccggccgaggccgccggggtggcgcgcacgatcaagcggctc
atcgcgtccggcactccggccgcggagatcgcggtcctgtaccggatcaacgcccagtcc
gaggtgcacgagcaggcgctgacgaaactcgacatcccgtaccaggtccggggcggagag
ggattcttcacgcgcaccgaggtgcgtcaggccgtggcggcactacgtcaggccgcaggt
cgcgacgacctgccggatgcggtcggcgccgacctggtcacgctcgtccgcgcggtcctc
gttccgctggggctgaccgacgcggaaccggcgggtgcgcaggctcgcgaacggtggtcg
tcgctgtcggcgctggtcgcgctcaccgaggagcagctgacccaggacccggagttgacc
ctcgacgcgctgttgcgtgaactgagcctgcgggccgaggcgcggcacccacccgtcgtg
cagggtgtgacgctcgcgtccctgcacgccgccaaggggctcgaatgggacgccgtgttc
ctcgtcgggctgaccgacggaacgctgcccatccagcacgtgctcggcgactccaattcg
gcaccggacgaggccgccgtcgaggaggagcgccggttgctgtacgtcggcgtgacccgc
gcccgggagcacctgcagatgtcgtgggcgctgtcccggaacgagggcggccgcaagtcg
cggcgccgttcgcggttcctgcacggcctcatccccgaggattcacctgcctcgcggatc
gcggcgcccgccaagagcaccaagaagcgtccacggtgccggctgtgcggaaaacagctg
atcgggacgaccgcgaccatgctcggtcgctgtgaagggtgcccgtcgaacgtcgacgtg
gaactgctcgaatcgctgcggtcgtggcggctcgagaagtcgcgggagctgaaggttccg
gcgtacgtggtgttcagcgacaacacgttgacggctctcgccgagcagcgaccgcaggac
gatcgcgggctcgtcgcgatccccggaatcggtgcgaagaagctcgagcagttcggtgag
gacgtcctcggtgtgatcaagggaagcggtagtccctga
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