Rhodococcus sp. JVH1: JVH1_06140
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Entry
JVH1_06140 CDS
T10360
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhoj Rhodococcus sp. JVH1
Pathway
rhoj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhoj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JVH1_06140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhoj03019
]
JVH1_06140
03009 Ribosome biogenesis [BR:
rhoj03009
]
JVH1_06140
Enzymes [BR:
rhoj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JVH1_06140
Messenger RNA biogenesis [BR:
rhoj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JVH1_06140
Ribosome biogenesis [BR:
rhoj03009
]
Prokaryotic type
rRNA helicases
JVH1_06140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UvrA_inter
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XEM87887
LinkDB
All DBs
Position
1:complement(1304788..1306548)
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AA seq
586 aa
AA seq
DB search
MSDIERDPEPPTFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTG
KTAAFAVPILSKIDLTQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSY
GVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILA
DTPEYKQVALFSATMPGAIRKISKQYMHDPVEITMKSKTSTASNISQRYVQVAHQRKLDA
LTRVLEVEDFEAMIIFVRTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGA
LDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERH
LLKAIEKATRQPLAEMQLPSVDDVNAQRVSKFGDSITESLTSDNLALFRKMIEDYEQEHD
VPLADIAAALAVQSRDGEAFLMAPEPPPAPRREREPRERPARRFDEGPPTRSRGPEGQEL
ATYRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSSETLEALR
RTRISGVLIQLQPDSGPPSGRPRGGRDDRAGGKFQRDRDSRKKPRE
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatatcgagcgtgaccccgaaccccccacttttgccgacctcgacatcgatgat
cgggtcttgaaggcactgtccgatgtgggctacgagtcgccctcgccgatccaggcagcc
accattccgcccctcctcgccggcaacgacgtcgtcggcctggcgcagaccggcaccggc
aagaccgctgcgttcgcggttccgatcctctcgaagatcgacctgacgcagaagtcgccg
caggcgttggtcctcgcgccgacgagggagctggccctgcaggtcgcggaggcgttcggc
aagtactccgcccatatcccgggcctgcacgtcctgcccatttacggcggtcagagctac
ggcgtccagctgtccggactgcggcgcggcgcgcacgtggtcgtgggcacgcccggtcgc
gtgatcgaccacctggagaagggcacgctcgacctgtccaagctctcctacctcgtcctg
gacgaggccgacgagatgctgaagatgggtttccaggaggacgtcgagcgcatcctcgcc
gacaccccggagtacaagcaggtggcgctgttctcggccacgatgccgggggccatccgc
aagatctcgaagcagtacatgcacgaccccgtcgagatcacgatgaagtcgaagacgtcg
accgcgtccaacatctcgcagcggtacgtccaggtggcgcaccagcgcaagctcgacgcc
ctgacgcgtgtcctcgaggtcgaggacttcgaggcgatgatcatcttcgtgcgcaccaag
caggccaccgaggacctcgccgaaaagttgcggtctcgtggtttctccgcgtcggccatc
aacggcgacatcgtgcaggcgcagcgtgagcggaccatcggccagctcaagagcggcgcc
ctcgacatcctcgtggccaccgacgtggctgcgcgtggcctggatgtcgaccgcatctcc
cacgtcgtcaactacgacatcccgcacgacacggagtcgtacgtccaccggatcggccgt
accggtcgcgccggccgcgcgggcgaggcgttgctgttcgtggcaccgcgcgagcggcac
ctgctcaaggccatcgagaaggcgacccgtcagccgctggccgagatgcagctgcccagc
gtcgacgacgtcaatgcgcagcgtgtgtccaagttcggcgactcgatcaccgagagcctc
acgtccgacaatctggcgttgttccgcaagatgatcgaggactacgagcaggagcacgac
gtgccgctcgccgacatcgccgccgcgctcgcggtgcagtcgcgcgacggtgaggcgttc
ctcatggcacccgaaccgccgccggcgcctcgccgtgagcgcgagcctcgtgaacgcccg
gcacgccggttcgacgagggccccccgacgcggtcgcgtggaccggagggccaggagctc
gcgacgtaccggatcgcggtcggcaagcggcaccgtgtggtgccgggtgcgatcgtcggt
gccatcgcgaacgagggtgggctgcggcgcagcgatttcgggcacatcagcatccgcccc
gaccacagcctggtggagttgcccgccgacctgtccagcgagaccctcgaagccctgcgt
cgtacccggatctccggagtgctgattcagctgcaacccgattcgggtccgccgtcgggc
cgaccgcgtggtggccgcgacgatcgggcaggcggaaagttccagcgcgaccgggacagc
aggaaaaagccgcgcgagtag
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