Rhodococcus sp. JVH1: JVH1_06170
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Entry
JVH1_06170 CDS
T10360
Name
(GenBank) TM0106 family RecB-like putative nuclease
Organism
rhoj Rhodococcus sp. JVH1
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Paralog
GFIT
Motif
Pfam:
AAA_12
RNase_H_2
AAA_30
AAA_11
AAA_19
PDDEXK_1
ResIII
AAA_16
NAT10_TcmA_helicase
AAA_22
Viral_helicase1
Cas_Cas4
nSTAND3
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
XEM87893
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Position
1:1311629..1315096
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AA seq
1155 aa
AA seq
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MFLLDDTIVYSASDLSAAATCEFALLRRLDATLGLAGAGSAAPSVDDDPMLRRTSSLGDA
HEHRRLEQFRAEYGDGVVTMDRPEYTAVGLFDANLATVEAIRGGADVVYQGTFFDGRFLG
FCDFLVRDGDTYAVYDTKLSRHAKVSALLQLAAYAEALADNGIPTSPDVHLLLGDDSDSA
HSLGDIVPVYSARRSSLERILDEHRDEQSLAEWGDPRYTACGRCDTCTPEVEQHRDLLLV
AGMRTTQRSRLIAAGIGTLDALAAHAGSVEGLPERTLESLRAQAALQLRQESSGTPEFQV
YAPQALGGLPEPDDGDIFFDFEGDPLWAENGSTDWGLEYLFGVVEGPADAAVFRPFWAHD
RAEERQALVDFLDYVTARRQQYPNMHIYHYAAYEKSALLRLAGRHGVGEETVDTLLRDNV
LVDLYPVVRGCLRIGERSYSIKKLEPLYMPEQPRDGDVTNAAASVVAYADYCDHRDNGRE
DEARALLQGIADYNEYDCDSTLRLRDWLIGQAETHGVALRPPGDGPTPVTEDCTPAEAAL
REFAGHGPSEHREHDQQAAALMAAAVGYHRRERKPFWWAHFDRLVVPHDELSDIRDVLVV
SSAVVEENWHKSSPRQRKLRRRLQLTGRFGTGSTVGPKTTMYALYDTPAPEAVAGDNPQQ
RGTCTVNVLDVGKDGRRRDVVIVEELLNGEEYGQLPTAITPGPPITTDRIESSIAVAADD
MCAPLPELPLCASVDILRRSDPRTRSGNPLPPVDGTDYAGAITAALLDLEDSYVAVQGPP
GTGKTYTGARVIKALVEQHHWRIGVVAQSHSVIENMLGGVVKAGLPAELVAKKDGRHRAA
TWTDISSNDYPGFIDQAEETGCVIGGTAWDFANTDRVPPGSLDLLVIDEAGQFALANTIA
VGGAARNLLLLGDPQQLPQVSQGTHPEPVDASALGWLAEGHGALPASRGYFLERTWRMHP
ELCAPVSTLSYDGKLRSQESASAARRLDGMGPGVHTVFVDHQGNATQSPEESREVVNRIT
KLLGSGWTDPSEFEGTRPLDESDILVVAPYNAQVGLIERNLAAVGLDKVEVGTVDKFQGR
EAAVAIVSMTASAIEDVPRGMSFLLSRNRMNVAVSRGKWAAIIVRSESLTQYMPSTPEGL
TELGAFMRLTGQPKH
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
gtgttcctcctcgacgacaccatcgtctacagcgccagcgacctctccgcggccgccacc
tgcgagttcgcgttgttgcgccggttggacgccacactcgggctcgccggcgccggttcc
gccgccccgtccgtcgacgacgatccgatgctgcgacggacgtccagcctcggcgatgcg
cacgaacatcgccggctcgagcagttccgcgccgagtacggcgacggggtggtcacgatg
gaccgtcccgaatacaccgcggtgggcctgttcgacgcgaacctggccaccgtggaggcg
atccgcgggggcgccgacgtcgtgtaccaggggacgttcttcgacggccgcttcctgggt
ttctgcgatttcctcgtccgcgacggcgacacgtatgccgtgtacgacaccaaactgtca
cggcacgcgaaggtgtcggccctgctgcagctcgccgcgtacgcggaagcgctggccgac
aacgggatcccgacgtccccggacgtccacctgctgctcggcgacgacagcgactcggcg
cactcgctcggcgacatcgttcccgtgtactccgcgcgacggtcctcgctcgaacgaatt
ctcgacgagcaccgcgacgagcagtcgctcgcggagtggggcgacccccggtacacggcg
tgcggccggtgcgacacgtgcaccccggaggtggagcagcaccgcgacctcctgctggtg
gccggaatgcgcacgacgcagcggagccggctgatcgcggccgggatcggcaccctcgat
gccctcgccgcgcatgcgggcagcgtcgagggcctccccgagcgcaccctggaatcgctt
cgcgcgcaggcggccctgcagttgcggcaggagtcctcgggcacccccgagttccaggtg
tacgccccgcaggctctgggcgggctgcccgaaccggacgacggcgacatcttcttcgac
ttcgaaggagacccgctctgggccgagaacggatccacggactggggtctcgaatacctc
ttcggcgtagtcgagggtcccgccgacgccgccgtgttccggccgttctgggcacacgac
cgcgccgaggagcggcaggcactcgtcgacttcctcgactacgtcaccgcgcgtcgtcag
cagtacccgaacatgcacatctaccactacgccgcgtacgagaaatcggcgctgctgcga
ctggcgggacggcacggcgtcggcgaggagaccgtcgacaccctgctgcgcgacaacgtc
ctcgtcgatttgtatccggtggtgcgcgggtgcctgcgcatcggcgaacggtcctacagc
atcaagaaactcgaaccgctgtacatgccggagcagccgcgcgacggcgacgtcaccaac
gccgccgcgtcggtggtcgcgtacgccgactactgcgatcaccgcgacaacggccgcgag
gacgaggcacgcgcgctgctgcagggcatcgccgactacaacgagtacgactgcgattcc
acgctgcggctgcgcgactggttgatcgggcaggcggagacgcacggcgtggctctccgg
ccgcccggcgacgggcccaccccggtgaccgaggactgcacccccgcggaggcggcgttg
cgcgagttcgccgggcacggaccgagcgagcaccgcgagcacgatcagcaggcggccgca
ctcatggcggcggcggtcggctaccaccgccgcgagcggaaaccgttctggtgggcgcac
ttcgaccggctggtcgtgccgcacgacgaactgtccgacatccgggacgttctggtggtg
tcgtccgcggtcgtcgaggagaactggcacaagagcagcccgcggcaacgcaagctgcgc
cggcgcctgcagctcaccggccgtttcgggaccgggagcacggtggggcccaagaccacg
atgtacgcgctctacgacactcccgcacccgaggcggtcgcgggagacaatccgcagcag
cggggaacgtgcacggtcaacgtgctcgacgtcgggaaggacggccggcgccgcgacgtc
gtgatcgtcgaggaactcctgaacggcgaggagtacgggcaacttccgacggcgatcacc
cccggtcccccgatcacgaccgaccgcatcgaatcgtccatcgcggtggccgcggacgac
atgtgcgcaccgctgccggagctcccgttgtgcgcgtcggtggacattctgcggcggtcc
gacccgcgcacccggagcgggaacccgctcccgcccgtcgacggcacggactacgcgggc
gcgatcaccgcggcactactcgacctcgaagactcgtacgtcgcagtgcagggacctccc
ggcaccggcaagacgtacaccggggcccgggtgatcaaggcgctcgtcgagcagcaccac
tggcggatcggcgtggtcgcgcagtcgcattcggtgatcgagaacatgctcggcggcgtc
gtgaaggccgggctccccgccgaactcgtcgcgaagaaggacgggcggcatcgcgccgcg
acgtggaccgacatcagctccaacgactacccgggtttcatcgaccaggccgaggagacg
ggttgcgtgatcggcgggaccgcctgggatttcgcgaacaccgaccgcgttccgcccggc
agcctcgatctgctggtcatcgacgaggccgggcagttcgctctcgccaacaccatcgcg
gtgggcggggcggcccgcaacctcctgcttctcggcgacccccagcaacttccgcaggtc
agccagggcacccacccggaaccggtggacgcgtcggccctcgggtggctcgccgagggg
cacggggcgctgcccgcgagccggggttatttcctcgagcgcacgtggcggatgcacccg
gaactgtgcgcacccgtgtcgacgctgtcctacgacggcaagctgcgttcgcaggaatcg
gccagtgccgcacggcgactcgacggcatggggccgggtgtgcacaccgtcttcgtcgac
caccagggcaatgccacccaatccccggaggaatcgcgggaggtggtcaaccggatcacg
aagctgctcggttccggctggaccgaccccagcgagttcgagggcacccgcccactcgac
gagtccgacatcctggtggtggcgccgtacaacgcgcaggtcgggttgatcgaacgcaat
ctggccgcggtcggtctcgacaaggtcgaggtgggcacggtcgacaagttccagggccgg
gaggcggccgtcgccatcgtgtcgatgactgcgtcggcgatcgaggacgtgccgcgcggc
atgtcgttcctgctgtcgcggaaccggatgaacgtggcggtgtcccgcggcaagtgggcg
gcgatcatcgtccggtcggaatcgttgacgcagtacatgccgagcaccccggaaggtctg
accgagctgggtgccttcatgcggctcaccggtcagccgaagcactga
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