Rhodococcus sp. JVH1: JVH1_08480
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Entry
JVH1_08480 CDS
T10360
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhoj Rhodococcus sp. JVH1
Pathway
rhoj03420
Nucleotide excision repair
rhoj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhoj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JVH1_08480 (pcrA)
03430 Mismatch repair
JVH1_08480 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhoj03400
]
JVH1_08480 (pcrA)
Enzymes [BR:
rhoj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JVH1_08480 (pcrA)
DNA repair and recombination proteins [BR:
rhoj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JVH1_08480 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
JVH1_08480 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
XEM88328
LinkDB
All DBs
Position
1:complement(1801065..1803551)
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AA seq
828 aa
AA seq
DB search
MNTISGTASPLSATSTPHAAAPARAGSDALLQGLNPQQREAVVHAGSPLLIVAGAGSGKT
AVLTRRIAYLLAERGVMPGQILAITFTNKAAAEMRERVAHLVGPRANSMWVSTFHSSCVR
ILRAQAALLPGLNSNFSIYDADDSRRLLTMIAKDLNIDTKRYSARLLATHISNLKNELVD
PEQASADADKDPAELPRLIAKVYGHYQQRLRSANALDFDDLIGETVAMLQAFPQVAEYYR
RRFRHVLVDEYQDTNHAQYMLVRELVGGTADGEDADHRVAPAELCVVGDADQSIYAFRGA
TIRNIEEFERDYPDARTILLEQNYRSTQNILSAANSVISKNTGRREKRLWTDSGVGELIT
GYVADNEHDEASFVASEIDKLVDSGDAKFGDVAVFYRTNNSSRALEEIFIRLGVPYKVVG
GVRFYERKEVRDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVAVHSEQRGISFA
EALRDGGEGRVPLLNTRSQKAIASFLELMDGLRVLLPPETTADDVVPDQLGDIGDVVEAV
LERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARNAAGLVEPPEDGDVDARDGE
PDPGSLAAFLERVSLVADSDQLPDNDEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMR
ALGDPTELSEERRLAYVGITRARQRLYLTRAVMRSAWGQPIQNPESRFLQEIPSDLVHWR
REDPGTGIGSGGAIGGGRARGSGYGGQGFGGGSGYGGGSAGTPSFGAARTRNNNLVLTVG
DRVSHDKYGLGTVLETKGAGPTATVTIDFGSAGKVRLMLIGGVPMVKL
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgaacactatctccggcaccgcttctcccctgagcgccacgtcgactccgcacgccgcc
gcaccggcgcgcgcagggtccgatgcgctcctccagggcctcaacccacagcaacgggaa
gcggtcgtgcacgccggttctccgctgttgatcgtcgcgggtgcgggctcgggcaagacg
gctgtgctcacccgccgcatcgcatatctgctggccgagcggggggtgatgcccggtcag
atcctggccatcacgttcaccaacaaggctgccgcggagatgcgggaacgcgtcgcccac
ctcgtcggccccagggccaacagcatgtgggtgtccacgttccactcgagctgcgtgcgg
atcctgcgggcccaggcggcgctgctccccggcctcaactcgaacttctccatctacgac
gcggacgattcgcggcgactgctgacgatgatcgccaaggatctgaacatcgacaccaag
cgctactcggctcggctgctcgccacccacatctcgaatctcaagaacgagctcgtcgat
cccgagcaggcgagtgccgacgccgacaaggatccggcggaactgcctcggctgatcgcc
aaggtgtacgggcactaccagcagcggttgcgttctgcgaacgcgctggacttcgacgac
ctgatcggcgagacggtcgcgatgctgcaggcgttcccccaggtggcggagtactaccgc
cggaggttccgccacgtgctggtcgacgagtaccaggacacgaaccacgcccagtacatg
ctggtacgcgagctggtcggcggaaccgcggacggcgaggacgcggaccaccgggtcgcc
ccggccgagctgtgcgtggtgggcgacgcggatcagtcgatctacgcgttccgcggcgcc
acgatccgcaacatcgaggagttcgagcgcgactacccggacgcccgcaccatcctgctg
gagcagaactaccgttccacccagaacatcctgtcggcggccaactcggtgatctcgaag
aacaccggccggcgtgagaagcggctgtggaccgattcgggtgtgggtgagctcatcacc
ggctacgtcgcggacaacgagcacgacgaggcgtcgttcgtggcgtccgagatcgacaag
ctcgtcgattccggcgacgccaagttcggtgacgtcgccgtgttctaccgcaccaacaat
tcgtcccgtgccctcgaggagatcttcatccggctcggcgttccgtacaaggtcgtcggc
ggagtgcggttctacgagcgcaaggaggtgcgcgacatcgtcgcgtatctccgtgtcctc
gcgaacgaggacgacaccgtcagcctgcgccggatcctcaacacaccccgccgcggcatc
ggcgaccgcgccgaggcgtgcgtggccgtccattccgagcagcggggcatcagcttcgcc
gaggcactgcgggacggcggtgagggccgggtaccgctgctgaacacccgttcccagaag
gccatcgcgtcgttcctcgagctcatggacggactgcgggtgctgctcccaccggagacc
actgcggacgacgtcgtccccgaccagctcggcgacatcggcgacgtcgtcgaggcggtc
ctggagcggacgggataccgcgccgaactcgcggcgagcagtgacccccaggacggggcg
cgcctcgacaacctcaacgagctcgtcagcgtggcgcgtgagttcagctccgacgcgcgg
aacgcggccggcctcgtggaaccgccggaggacggcgacgtcgacgcccgcgacggcgaa
ccggaccccggttccctcgccgccttcctcgagcgagtgtccctggtcgcggactccgat
cagctgcccgacaacgacgagggcgtcgtcacgctgatgaccctgcacaccgcgaagggg
ctcgagttccccgtcgtcttcgtcaccgggtgggaagacggtcagttcccgcacatgcga
gcgctcggcgaccccacggaactgtcggaggagcgccggctcgcgtacgtcggcatcacc
cgtgcccggcagcggctgtatctgacgcgggccgtcatgcggtcggcgtggggccagccc
atccagaacccggagtcgcggttcctgcaggagatcccgtcggatctcgtgcactggcgt
cgtgaggaccccggcaccggtatcggttccggtggtgcgatcggcggtggccgtgcgcgt
ggatcgggatacggcggtcagggcttcggcggcggttccggttacggcggcgggtcggca
ggcacgccgagcttcggtgccgcccgcacccgcaacaacaacctggtgctcacggtcggc
gaccgcgtcagtcacgacaagtacggcctcggcacggtcctcgagaccaagggcgccggg
ccgaccgcgacggtcaccatcgacttcggcagcgcgggcaaggtccggctgatgctgatc
ggtggcgtcccgatggtcaagctgtag
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