Rhodococcus sp. JVH1: JVH1_14570
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Entry
JVH1_14570 CDS
T10360
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rhoj Rhodococcus sp. JVH1
Brite
KEGG Orthology (KO) [BR:
rhoj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhoj03032
]
JVH1_14570 (topA)
03400 DNA repair and recombination proteins [BR:
rhoj03400
]
JVH1_14570 (topA)
Enzymes [BR:
rhoj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JVH1_14570 (topA)
DNA replication proteins [BR:
rhoj03032
]
Prokaryotic type
DNA Topoisomerases
JVH1_14570 (topA)
DNA repair and recombination proteins [BR:
rhoj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JVH1_14570 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
SPESP1
Motif
Other DBs
NCBI-ProteinID:
XEM89454
LinkDB
All DBs
Position
1:complement(3196340..3199261)
Genome browser
AA seq
973 aa
AA seq
DB search
MAKGDNGSAQGAAGASGQPRRLVIVESPTKARKIAPYLGKNYVVEASVGHIRDLPRGAAD
VPAKYKGESWARLGVNVDHDFEPLYVVSPEKKSKVTELKSLLKDADELFLATDPDREGEA
IAWHLLETLKPKIPVRRMVFHEITEPAIRAAAEDTRELDNDLVDAQETRRILDRLYGYEV
SPVLWKKVMPRLSAGRVQSVATRVIVQRERERMAFRSASYWDISATLDAGADASPRSFGA
RLVSVDGSRVATGRDFGADGQLKTSTVTVLDEARAQRLAESLAGVDLTVSSAESKPYTRK
PYAPFMTSTLQQEAGRKLRFTSERTMRIAQRLYENGYITYMRTDSTTLSSSAIAAARAQA
TELYGAEYVHDTPRQYTRKVKNAQEAHEAIRPAGDVFQTPGQLHSRLDTDEFRLYELIWQ
RTVASQMADARGTTLTLRITGTAGTGEECTFSSSGRTITFAGFLKAYVESVDEEAGGQSD
DAESRLPVLVEGQAVTATKLDPDGHTTNPPARYTEASLIKTLEELGIGRPSTYSSIIKTI
LDRGYVYKRGSALVPSWVAFAVIGLLEMHFGRLVDFDFTAGMEDDLDAIAGGREQRGNWL
SSFYFGGDHGAEGSVAREGGLKKMVGVNLEEIDAREVNSIRLFDDAEGREVHVRVGRFGP
YLERMVQNPDDPEGDLISQRANLPDDLPPDELTPEYAEKLFSTPQEGRKLGVDPLTGHEI
VAKEGRFGPYVTEILPEPEPEPEPAVVPVTDESGDGTTKTKTAAKKAPAKKAAAKKATGP
KPRTGSLLKSMDLATVTLDDALKLLSLPRVVGVDPESKEEITAQNGRYGPYLKKGTDSRS
LATEDQMFTVTLDEALKIYAEPKRRGRQAAATPPLRELGVDTVSEKPMVIKDGRFGPYVT
DGETNASLRKGDEVESITDARASELLADRRARGPVKKKAAAKKAPAKKAAKKTAAKKAPA
KKAASKKAADKKA
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
gtggctaaaggggacaacggcagtgcacagggtgcggcgggagcgtccggccagcctcgc
cgcctcgtgatcgtcgagtcgccgaccaaggcccgcaagatcgccccgtacctcggaaag
aactatgtcgtcgaggcgtcggtcggtcacatccgcgaccttccgcgcggagccgcagac
gtcccggccaagtacaagggtgaatcctgggcgcggctcggagtcaacgtcgaccatgat
ttcgaacccctctacgtggtcagtccagagaagaagtccaaggtcacggagctgaagagc
ctcctcaaggacgccgacgaactcttcctcgccaccgaccccgaccgtgagggcgaagcg
atcgcctggcatctcctcgagacgctcaagccgaagatcccggttcgccggatggtcttc
cacgagatcaccgagccggccatccgcgccgcggccgaggacacccgcgaactcgacaac
gacctggtcgacgcgcaggagacccgccgcatcctcgaccgtctgtacggctacgaggtc
agccccgtgctgtggaagaaggtcatgccgaggctgtcggcaggccgagtgcagtccgtc
gccacccgtgtcatcgtgcagcgggaacgtgagcggatggcgttccgctcggcgtcctac
tgggacatctccgccaccctcgacgccggcgccgacgccagcccccgcagtttcggggcg
cgtctggtgagcgtcgacggctcccgggtcgccaccggccgcgacttcggcgccgatggc
cagctgaagacgagcaccgttacggttctggacgaggcgcgagcgcagcgtctggccgag
tccctcgccggtgtcgacctcaccgtctcctccgccgagagcaagccgtacacccgcaag
ccgtacgcgccgttcatgacgtcgacgctgcagcaggaggcgggccgcaagctccgcttc
acgtccgagcggaccatgcgcatcgcgcagcggctgtacgagaacggctacatcacctac
atgcgtaccgactcgacgaccttgtcgtcgtcggcgatcgctgccgcccgcgcgcaggcc
accgagttgtacggcgccgagtacgtgcacgacacaccgcgccagtacacgcgcaaggtc
aagaacgcgcaggaggcgcacgaggccatccgcccggccggtgacgtgttccagacccct
ggtcagctgcactcccgcctcgacaccgacgagttccgcctgtacgagctgatctggcag
cgcaccgtggcgtcgcagatggcggacgcgcggggcacgacgctcaccttgcggatcacc
ggaaccgcgggcaccggcgaggaatgcaccttctcctcgtcgggccgcaccatcacgttc
gccggattcctgaaggcctacgtggagagcgtcgacgaggaggccggcggccagtccgac
gacgccgagtcgcgcctgccggtgctcgtcgagggccaggcggtcaccgccaccaagctc
gatcccgatggccacaccacgaacccgcccgcccgctacaccgaggcgagcctgatcaag
accctcgaagagctgggcatcggccgcccgtccacctactcgtcgatcatcaagaccatt
ctcgatcgcggatatgtctacaagcgcggcagtgcgctggtcccgtcctgggtggcgttc
gccgtcatcggtctcctcgagatgcacttcgggcggctggtggacttcgacttcaccgcc
gggatggaagacgatctcgacgcgatcgccggtggccgggaacagcgcggcaactggttg
agcagtttctacttcggcggcgatcacggcgccgagggttcggttgcccgtgagggcggc
ctgaagaagatggtcggggtcaacctcgaggagatcgacgctcgcgaggtcaactcgatc
aggctcttcgacgacgccgagggacgggaagtgcacgtccgcgtcggacggttcggtccg
tacctcgagcggatggtccagaacccggacgaccccgagggcgacctcatttcccagcgg
gccaacctgcccgacgaccttccgccggacgagctgacaccggagtacgcggagaagctc
ttctcgacgccgcaggagggtcgcaagctgggcgtcgacccgctcaccggccacgagatc
gtcgcgaaggagggccgcttcggcccctacgtcaccgagatccttcccgagccggaaccg
gagcccgaaccggcagtggtgccggtgacggacgaatccggcgacgggacgaccaagacg
aagacagctgccaagaaggcgcccgcgaagaaggcggcggcgaagaaggccaccggtccg
aagccgcggacgggttcgctgctcaagtcgatggacctggcgacggtgaccctcgacgac
gccctgaagctgctgtcgctgccgcgcgtcgtgggtgtcgatccggagtccaaggaagag
atcaccgcgcagaacggccgctacggcccgtacctgaagaaggggacggattcgcggtcc
ctcgccaccgaggaccagatgttcacggtgaccctcgacgaggcgctgaagatctatgcg
gagcccaaacgccgcggacgtcaggctgcggccaccccgccgctgcgtgagctgggcgtc
gacacggtcagcgagaagccgatggtgatcaaggacggccggttcgggccgtacgtgacc
gacggtgaaaccaacgccagcctccgcaagggcgacgaggtggagtccatcaccgacgcc
cgcgcttcggaactgctggcggatcggcgtgcccgcggtcccgtcaagaagaaggccgcc
gcgaagaaggcgcccgccaagaaggctgcaaagaagaccgccgccaagaaggcgccggcc
aagaaggcggcctcgaagaaggcagcggacaagaaggcgtga
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