Rhodococcus sp. JVH1: JVH1_27475
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Entry
JVH1_27475 CDS
T10360
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rhoj Rhodococcus sp. JVH1
Pathway
rhoj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhoj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JVH1_27475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhoj03021
]
JVH1_27475
03400 DNA repair and recombination proteins [BR:
rhoj03400
]
JVH1_27475
Enzymes [BR:
rhoj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JVH1_27475
Transcription machinery [BR:
rhoj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JVH1_27475
DNA repair and recombination proteins [BR:
rhoj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JVH1_27475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
XEM93931
LinkDB
All DBs
Position
1:5908763..5912269
Genome browser
AA seq
1168 aa
AA seq
DB search
MLEGRILAVSSQTKAVSGIPGAPKRVSFAKIREPLEVPGLLDVQTDSFEWLIGAQSWRER
AAARGDSAISGGLEDILAELSPIEDFSGSMSLSFSDPRFDEVKASTDECKDKDMTYAAPL
FVTAEFINNNTGEIKSQTVFMGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYFDHSVDK
GTEKDLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTTEQITERFG
FSEILMATLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKDKRYDLARVGR
YKINKKLGLNLGQPIVASTLTEEDIVATIEYLVRLHAGDTEMTAPGGSAVPVEVDDIDHF
GNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGT
SQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPN
IGLIGSLSVYARVNPFGFIETPYRKVENGQVTDQVDYLTADEEDRHVVAQANSALDANGH
FTDDRILVRRKGGEVEFVSSAEIDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQR
QAVPLVRSEAPLVGTGMELRAAVDAGDVIVTEKTGVVEEVSADYVTVMADDGSRKTYRMR
KFARSNQGTCANQRPIVDEGQRVEFGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYED
AIILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIIRIG
AEVRDGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGIRVF
SRDDDDDLPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPQEDMPFLPDGTPV
DIILNTHGVPRRMNIGQILETHLGWIGKTGWNVQIAGDGSRPDWAEQLPEEMLSAPADSN
IATPVFDGAKEDELTGLLGSTLPNRDGEVMVASDGKATLFDGRSGEPFPYPVSVGYMYII
KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI
KSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIAMADGD
DEDLERAAANLGINLSRNEAATVDDLAN
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaaggacgcatcttggcagtctctagccagaccaaggcagtttccggaatcccc
ggagccccgaagagggtttcgttcgcaaagattcgcgaacccctcgaagttcccgggctt
cttgatgtacaaaccgattcgttcgagtggttgatcggtgcgcagagctggcgcgaacgc
gccgccgctcgtggcgacagcgcaatctccggcggtctcgaggacattctcgcggagctt
tccccgatcgaggatttctcgggctcgatgtctctgtccttctcggacccgcgcttcgac
gaggtgaaggcctcgacggacgagtgcaaagacaaagacatgacctacgcggcgccgttg
ttcgtcaccgcggagttcatcaacaacaacaccggtgagatcaagagccagacggtcttc
atgggcgacttcccgatgatgaccgacaagggcacgttcatcatcaacggcaccgagcgt
gtcgtggtctcgcagctggtgcgttcccccggcgtctacttcgaccactccgtcgacaag
ggcaccgagaaggacctgcacagcgtcaaggtcatcccgggacgtggtgcatggctcgag
ttcgacgtggacaagcgcgacacggtcggcgttcgcatcgaccgcaagcgccgccagccc
gtcaccgtgctgctgaaggccctcggctggaccaccgagcagatcaccgagcgcttcggc
ttctcggagatcctcatggcgacgctcgagaaggacaacaccgccggcaccgacgaggcg
ctgctcgacatctaccgcaagctgcgtccgggcgagccgccgaccaaggagagtgcgcag
acgctcctggagaacctgttcttcaaggacaagcgctacgacctggctcgcgtgggtcgc
tacaagatcaacaagaagctgggcctgaacctgggacagccgatcgtcgcgtcgaccctc
accgaggaagacatcgtcgccaccatcgagtacctggtgcgcctgcacgccggtgacacc
gagatgaccgcccccggcggcagtgcggtgcccgtcgaggtcgacgacatcgaccacttc
ggtaaccgtcgtctgcgcacggtcggcgagctcatccagaaccagatccgcgtgggcctg
tcccgcatggagcgcgtggttcgtgagcgcatgaccacccaggacgtcgaggcgatcacg
ccgcagacgctgatcaacatccggcccgtcgtggctgcgatcaaggagttcttcggaacc
tcccagctgtcgcagttcatggaccagaacaacccgctgtcggggctgacgcacaagcgt
cgtctgtccgccctcggcccgggtggtctgtcccgtgagcgcgccggcctggaggtgcga
gacgttcacccgtcgcactacggccgcatgtgcccgatcgagacccctgagggtccgaac
atcggtctgatcggttcgctgtcggtgtacgcacgggtcaacccgttcggcttcatcgag
acgccgtaccgcaaggtcgagaacggccaggtcaccgaccaggtcgactacctgaccgcg
gacgaagaggaccgccacgtcgtcgcccaggccaactcggccctcgacgccaacggtcac
ttcacggacgatcgcattctggtccgtcgtaagggtggcgaggtcgagttcgtctcgtcc
gccgagatcgactacatggacgtctcgccgcgacagatggtgtccgtcgcgaccgcgatg
attccgttcctcgagcacgacgacgccaaccgtgccctgatgggtgcgaacatgcagcgt
caggcggtgccgctcgtccgtagcgaagctccgctggtcggtaccggcatggaactgcgt
gccgccgtcgacgcgggcgacgtcatcgtcaccgagaagaccggtgtcgtggaagaggtc
tccgccgactacgtcacggtcatggccgacgacggaagccgcaagacctaccggatgcgc
aagttcgcgcgttcgaaccagggcacctgcgccaaccagcgtccgatcgtggacgaggga
cagcgtgtcgagttcggacaggtcctcgccgacggcccctgcaccgagaacggtgagatg
gcgctcggcaagaacctgctcgtcgcgatcatgccgtgggaaggccacaactacgaggac
gcgatcattctgtcgcagcgcctcgtggaagaggacgtcctgacctcgatccacatcgag
gagcacgagatcgatgcccgcgacaccaagctcggtgccgaggagatcactcgcgacatc
ccgaacgtctccgacgaggtcctcgccgacctcgacgagcgcggcatcatccgtatcggt
gccgaggttcgtgacggcgacgtgctggtcggaaaggtcacgccgaagggcgagaccgag
ctgacccccgaggagcgcctgctgcgcgccatcttcggtgagaaggctcgcgaggttcgc
gacacgtcgctgaaggtcccccacggtgagaccggcaaggttatcggcatccgcgtgttc
tcgcgcgacgacgacgacgatctgccccccggtgtcaacgagctggtccgcgtctacgtg
gcacagaagcgcaagatccaggacggcgacaagctcgccggccgccacggcaacaagggc
gtcatcggcaagatcctcccgcaggaggacatgccgttcctgcccgacggcactccggtc
gacatcattctgaacacccacggtgttccgcgtcgtatgaacatcggtcagatcttggag
acccacctcgggtggatcggcaagaccggctggaacgttcagatcgccggcgacggctcc
cgtcccgattgggcggagcagctgccggaggagatgctgtctgcacctgccgactccaac
atcgccaccccggtgttcgacggtgccaaggaagacgagctcaccggtctcctcggttcg
acgctgccgaaccgcgacggtgaggtcatggtcgcgtccgacggaaaggccacgttgttc
gacggtcgttccggcgagccgttcccgtacccggtctcggtcggctacatgtacatcatc
aagctgcaccacctggtcgacgacaagatccacgctcgttcgaccggtccgtactcgatg
atcacccagcagccgctcggcggtaaggcccagttcggtggccagcgcttcggtgagatg
gagtgctgggcgatgcaggcctacggcgcggcatacacgctgcaggagctgctcaccatc
aagtcggacgacgtggtgggtcgagtcaaggtgtacgaggccatcgtcaagggcgagaac
atccccgagccgggcatccccgagtcgttcaaggtgctcctgaaggagctccagtcgctc
tgcctcaacgtggaggtgctgtcctcggacggcgcggccatcgcgatggcggacggcgac
gacgaggacctggagcgggccgcagcgaacctgggcatcaacttgtcccggaacgaagcg
gcgacggtcgacgacctcgcgaactag
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