Rhodococcus sp. JVH1: JVH1_27480
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Entry
JVH1_27480 CDS
T10360
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhoj Rhodococcus sp. JVH1
Pathway
rhoj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhoj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JVH1_27480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhoj03021
]
JVH1_27480
03400 DNA repair and recombination proteins [BR:
rhoj03400
]
JVH1_27480
Enzymes [BR:
rhoj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JVH1_27480
Transcription machinery [BR:
rhoj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JVH1_27480
DNA repair and recombination proteins [BR:
rhoj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JVH1_27480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
XEM91843
LinkDB
All DBs
Position
1:5912388..5916344
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKSVADQRDADLEARAQKLEAD
IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIVDELL
YRELVDRYGEYFTGAMGAESIQKLMENFDIDAEAENLRETIRSGKGQKKLRALKRLKVVA
AFQTNQNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRLDEGAIGELA
ASTSDEAEQGVYSSPAEAQMAVDRGALVVQAKIKVRLTQQRPPRDIESELFPEGWNYGDG
WTAETTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSISDVLVPPEKAQIMESFEAQADQIEKKYQRGALNKTERNSALVKIWSEA
TDEVGKAMEAHFPDDNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSFK
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTTI
AEKQADGTLIRDAHVETSTYARTLAADAVDENGNVIVERGHDLGDPAIDALLEAGITQVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVA
GDDITGGLPRVQELFEARVPKGKAPIADVSGRVQLEDGDRFYKITIVPDDGGEEVVYDKL
SKRQRLRVFKHDDGTERLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQE
VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERADFEAANRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgcattggcctcgccagtgcagaggacatc
cgcaattggtcctacggcgaggtcaagaagccggagaccatcaactaccgcaccctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggtaagtacaagcgtgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggttcggcgtgagcgcatgggccacatcgaactggccgccccg
gtcacgcacatctggtacttcaagggcgtgcccagccgtctcggctacctgctcgacctg
gcgccgaaggatctcgaaaagatcatctacttcgccgcgtacgtcatcgtcggtgtcgac
gaggaactgcgtcacaacgagctgtccactctcgaagccgagatgcaggtcgagaagaag
tccgtcgcggatcagcgtgacgccgacctcgaggcccgcgcgcagaagctcgaagccgac
atcgccgagctggaagcggagggcgcgaagtccgacgtccgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgtcagctccgtgaccgcgcgcagcgtgagctggaccgtctcgac
gagatctggaccacgttcaccaagctcagtgtcaagcagctcatcgtcgacgaactgctg
taccgcgagctcgtcgaccgctacggcgagtacttcacgggcgccatgggtgccgagtcg
atccagaagctcatggagaacttcgacatcgacgccgaggccgagaacctccgcgagacc
atccgcagcggcaaggggcagaagaagctccgtgcgctgaagcgtctcaaggtcgtcgca
gccttccagaccaaccagaactcgcccatgggcatggttctgaacgccgtcccggtgatc
ccgccggagctgcgtccgatggttcagctcgacggtggccgtttcgccacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtggacgcg
ctgttcgacaacggccgtcgtggccgccccgtcacgggtcccggtaaccgtccgctgaag
tccctgagcgacctgctcaagggcaagcagggtcgtttccgtcagaacctgctcggcaag
cgcgtcgactactcgggtcgttccgttatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaagctgatggctctcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcgcatggtggaacgtcagcgc
gcacaggtgtgggacgtccttgaagaggtcatcgccgagcaccccgtgctgctgaaccgt
gcaccgacgctgcaccgcctgggcatccaggccttcgagccgcagctggtcgagggtaag
gccattcagctccacccgctggtgtgtgaggccttcaacgccgacttcgacggtgaccag
atggccgtgcaccttccgctgtccgcggaggcgcaggccgaggctcgcatcctgatgctg
tcgtcgaacaacatcctgtcgcccgcgtcgggtcgaccgctcgccatgccccgtctggac
atggtcaccggtctgtaccacctgacccggttggacgagggtgcgatcggcgagctcgca
gcgtcgaccagcgacgaggcggagcagggcgtgtactcctcgcctgccgaggctcagatg
gccgtcgatcgtggcgcgctcgtcgtgcaggcgaagatcaaggtgcggctcacgcagcag
cgcccgccccgcgacatcgagtcggagctgttccccgaaggctggaactacggtgacggc
tggaccgcggagacgacgctgggtcgcgtgctcttcaacgagctgctgcccgcggactac
ccgttcgtcaacgagcagatgccgaagaagcgtcaggcgacgatcatcaacgatctcgcc
gagcgctaccccatgatcgtggtcgcgcagaccgtcgacaagctgaaggacgccggtttc
tactgggccacgcgttccggtgtcacggtctcgatctccgacgtcctcgtgccgccggag
aaggctcagatcatggagtccttcgaggctcaggccgaccagatcgagaagaagtaccag
cgtggtgctctgaacaagaccgagcgcaacagcgccctggtcaagatctggtccgaggcc
accgacgaggtcggtaaggccatggaggcccacttccccgacgacaacccgatcccgatg
atcgtgaagtccggcgccgccggcaacatgactcaggttcgttcgctcgccggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgtccgatcaagtcttccttcaag
gaaggcctgaccgttctcgagtacttcatcaacacgcacggtgcccgtaagggtctggcc
gacaccgcgctccgcaccgccgactcgggctacctgacccgtcgtctggtggacgtctcg
caggacgtcatcgtccgcgaggtcgactgtggaaccgagcgcggcatcgtcaccacgatc
gccgagaagcaggccgacggcacgcttatccgcgatgcacacgtggagacgagcacgtac
gcccgcaccctggccgccgacgcggtcgacgagaacggcaacgtcatcgtcgagcgtgga
cacgacctgggcgacccggctatcgacgcgctgctcgaggcaggcatcacgcaggtcaag
gtccgctcggtgctcacctgcaccaccggcaccggcgtctgcgccacctgctacggccgc
tccatggccaccggcaagctcgtcgacatcggtgaggccgtcggtatcgtcgccgcacag
tccatcggtgagcccggtacccagctgaccatgcgtacgttccaccagggtggtgtcgct
ggagacgacatcaccggtggtctgccgcgtgttcaggagctgttcgaggcccgcgtcccc
aagggcaaggccccgatcgccgacgtcagtggccgcgtgcagctcgaggacggcgaccgc
ttctacaagatcaccatcgtcccggacgacggtggcgaagaggttgtctacgacaagctc
tcgaagcgtcagcgtctgcgtgtcttcaagcacgacgacggcaccgaacgccttctggcc
gacggtgaccacgtcgaggtcggtcagcagctcatggaaggtgctgccgatccgcacgag
gtgctgcgtgtcatgggcccccgtcaggtgcagatccacctcgtcaacgaggtccaggag
gtgtaccggagccagggtgtgtcgatccacgacaagcacatcgaggtcatcgtgcgccag
atgctgcgtcgcgtgacgatcatcgactcgggcgccacggagttcctgcccggttcgctg
accgagcgtgcggacttcgaagcggccaaccgccgtgtcgtcgccgagggtggcgagccg
gcagccggacgtccggtgctgatgggtatcaccaaggcatcgctggcgaccgactcgtgg
ctgtccgcggcgtcgttccaggagaccactcgcgtcttgaccgatgcggcgatcaactgc
cgctcggacaagctgatcggtctgaaggaaaacgtgatcatcggaaagctgatccccgcc
ggtaccggtatcaaccgttaccgcaacatccaggttcagccgaccgaagaagctcgcgct
gctgcgtacgcggttccgtcctacgacgaccagtactacagcccggacggcttcggccag
aacaccggtgccgcggtgccgctggacgattacggtttcagcaacgattaccggtag
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