Rhodococcus sp. JVH1: JVH1_29925
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Entry
JVH1_29925 CDS
T10360
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rhoj Rhodococcus sp. JVH1
Pathway
rhoj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhoj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JVH1_29925 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhoj03021
]
JVH1_29925 (rho)
03019 Messenger RNA biogenesis [BR:
rhoj03019
]
JVH1_29925 (rho)
Transcription machinery [BR:
rhoj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JVH1_29925 (rho)
Messenger RNA biogenesis [BR:
rhoj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JVH1_29925 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
XEM92304
LinkDB
All DBs
Position
1:6438726..6440819
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AA seq
697 aa
AA seq
DB search
MTDTDLIAAPVRASSVDTVGAQAGDSSQASSTAPGQGAVTASTKRAEARRGAGLSGMVLT
ELRTLAGELGIKGISGMRKGELIAAIKERQGGSSAPAAAATEAAPRTRATRAKRVESAQT
ELEVTPQVETTEKAAEPKTAEPATGDGAAADTDTAEGGRRGRQRRGSARRAGAPEQGDQS
GNAQDTASANAADTQQAERKQADDRQDSAEKPAKQDGSGEQGGDRNRRERGGDRGDRGDR
GDTRGERGDRGERGDRDNRGDRSQGNNGPRNNDNRPGDDEEGGRGRRGRRFRERRRGRDR
GEGGGGDARETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLR
RGDAITGAVRVGREGEQGNQRQKFNPLVRIDTVNGGDVEAAKKRPEFGKLTPLYPNQRLR
LETTPNILTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAIATNNPECYLMVVLV
DERPEEVTDMQRSVKGEVISSTFDRPPGDHTSVAELAIERAKRLVEAGKDVVVLLDSITR
LGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDT
VIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAVLHKLRRVLSG
LDSHQAIDLLIDRLKKSKSNIEFLMQVSKTAPGAIDD
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatacggacctcatcgccgctcctgtgcgcgcctcctcggtggataccgttggc
gcgcaggcaggcgactcttcacaggcgtcatcgaccgcacccggccaaggtgcagtgacg
gcctccaccaagcgcgccgaggcgcgccggggtgccgggctgtccggaatggtgctcacc
gagctccgcactctcgcaggtgagctgggcatcaagggcatctcggggatgcgcaagggc
gaactgattgccgcgatcaaggagcgccagggcggctcttccgccccggccgctgccgcg
accgaagccgctccccggacccgggcgacccgcgcgaagcgcgtcgagtccgctcagacc
gaactcgaagtgactccccaggtggagaccaccgagaaggccgccgagcccaagacggcc
gaacccgcgacgggcgacggcgcagccgccgacacggacaccgccgaaggcggccgccgc
gggcgtcagcgccgcggatccgcgcgtcgggcaggcgcacccgagcagggtgaccagagc
ggtaacgctcaggacaccgcctcggcgaatgccgccgacacgcagcaggccgagcgcaag
caggccgacgaccgtcaggattccgcagagaagccggccaagcaggacggctccggcgaa
cagggcggcgaccgcaaccgacgtgagcggggcggcgaccgcggtgatcgtggcgaccgt
ggcgacacccgcggcgaacgcggtgaccgcggcgaacgcggcgatcgcgacaaccgtggg
gaccgcagccagggcaacaacggcccgcgcaacaacgacaaccgcccgggcgacgacgag
gaaggcggtcgcggacgccgcggacgtcgcttccgcgaacgtcgtcgtggacgcgaccgc
ggcgaaggcggcggcggtgacgcccgcgagaccgagatccgcgaggacgacgtcctgcag
ccggtcgccggcatcctggacgtcctcgacaactacgcgttcgtgcggacctccggctac
ctggccggaccgaacgacgtctacgtgtcgatgaacctgatccgtaagaacggcctccgt
cgcggcgacgccatcaccggcgcagtccgggtcgggcgcgagggcgaacagggcaaccag
cgccagaagttcaacccgctggtccgcatcgacaccgtcaacggtggcgacgtggaagcg
gccaagaagcgccccgagttcggcaagctcaccccgctgtacccgaatcagcggctgcgt
ctggagacgacgccgaacatcttgacgacccgtgtcatcgacctggtgatgccgatcggc
aagggacagcgtgcgctgatcgtgagcccgccgaaggccggtaagaccagcgttctgcag
gccatcgcgaacgccatcgcgaccaacaaccccgagtgctacctcatggtcgtgctggtc
gacgagcggcccgaagaggtcaccgacatgcagcgttcggtgaagggcgaggtcatctcc
tcgaccttcgaccgtccgccgggagaccacacctcggtcgccgaactggccatcgagcgt
gcgaagcgtctggtggaggcgggtaaggatgtcgtcgtcctcctcgactcgatcactcgc
ctcggccgtgcgtacaacaactcgtcgccggcttcgggacgcatcctctccggtggtgtc
gactcgaccgcgctctacccgccgaagcgtttcctcggtgctgcgcgcaacatcgagaac
ggcggttcgctcacgatcatcgcgacggccatggtcgagaccggttccaccggcgacacc
gtgatcttcgaggagttcaagggcaccggtaacgccgagctgaagctcgaccgcaagatc
gcggaacgtcgtgtgttcccggccgtggacgtgaacccctcgggtacgcgtaaggacgag
ctgctgctcagcccggacgaggccgcggtgctgcacaagctccggcgcgtgctctcgggt
ctcgactcgcaccaggccatcgatctgctgatcgaccgcctcaagaagagcaagagcaac
atcgagttcctcatgcaggtgtcgaagactgctccgggcgcgatcgacgactga
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