Rhodococcus sp. JVH1: JVH1_30780
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Entry
JVH1_30780 CDS
T10360
Name
(GenBank) translation initiation factor IF-2 N-terminal domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhoj Rhodococcus sp. JVH1
Pathway
rhoj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhoj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JVH1_30780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhoj03019
]
JVH1_30780
03009 Ribosome biogenesis [BR:
rhoj03009
]
JVH1_30780
Enzymes [BR:
rhoj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JVH1_30780
Messenger RNA biogenesis [BR:
rhoj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JVH1_30780
Ribosome biogenesis [BR:
rhoj03009
]
Prokaryotic type
rRNA processing factors
JVH1_30780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DUF8067
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
XEM92462
LinkDB
All DBs
Position
1:6615914..6619330
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AA seq
1138 aa
AA seq
DB search
MADQAPPTNSEPNETATTGSVVPALPEKIRVHALAKLLGVTSKQVLAEAAALGTELRSAQ
SSLQRDVAERVHAAFTAAQTAPTEPPAAVEPVAETPAAEPVAEPPAAEPVVEVAPEPVAA
ADVEEAAAEQTPAPAVPTEEAAAQEPVAEEAAVAERDLGRDLFTTASYQVEAPAAEPAVE
TPPAVSQVPLFLQPDLAAVETPPRRRRSRRDAGTPEPTTEQPPVAETREEVPEPAKATDT
GTADTESDESDVDGDQPRRRRRGRRGRGRGRGEQQNEQDTDIDTEGAEAEESARESVREE
KAAETPTREPEEKPKKDSEEQPAGAEQAEAESGDEETGEGDSDGSSRRRRRRRRRKSGGE
GSGEATSEDDPPNTVVHEREPRNKSRSKDEVQGITGSTRLEAKRQRRRDGRDAGRRRPPI
LTESEFLARREAVDRVMVVRDRIATGQPHATTQVAVLEDGVLVEHFVTTSASASMVGNVY
LGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSRKIEQALKPGDQVLVQVS
KDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKDILRDIVPSDAGVI
IRTASEGVSEEELARDVKRLQDQWAGIEAQAAKAESGKSGNPQALYEEPDLLVKVIRDLF
NEDFSKLVIEGDKAWSTVESYIRSVAPDLMPRLEQHTSDNGVDVFEAHRIDEQLAKALDR
KVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIG
GMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAF
STTCEHCHGRGIVVHAEPVEVKTSEDNGARGSSRGGDSGGSRKKRGRDKSSGGETSQPPV
HEETPTVDATVKRAHPVALAMAHHHHEEEAAHAHSGHEAESAEQPAAAVPEPQQPVAAEA
ETPAADLPGIEEAVAEAPAAVAAEAVVAPEAEDTVAEEAVVEEAVAEETVAEEPAVEAAP
AEAAPAEAAPVAETPEPVVEPEPQPEPVAPPRRRSRRVSRAAAAPVSETPSAGTVFVIPT
SETGAEHAPEPEPAMSASAVSAPPASSPDGGDSQASPRRPRRRRAAARPAGPPVDADN
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaagcgccgcccacaaattcagagccgaacgaaacggccaccaccgggagc
gtggttcccgcccttccggagaagatccgcgttcacgccctcgcgaagttgctgggcgta
acgagcaagcaggttcttgccgaggccgcggccctcggaaccgaactgcgcagcgcgcag
tcgagcctgcaacgcgacgtcgccgagcgggtgcacgcagccttcaccgctgcgcagacc
gctcccaccgaaccacccgccgcggtcgaaccggtcgcggagaccccggccgccgaaccg
gtcgcggagccccccgccgccgaacccgtcgtcgaggtcgcaccggaaccggtcgcggcc
gcggacgtcgaggaagcagcggccgagcagactccggctcccgcagttcccaccgaggaa
gcggccgcccaggagcccgtcgcggaggaggccgcggtcgccgagcgcgacctcggacgt
gacctgttcaccaccgcgtcctaccaggtcgaggcacccgccgccgagcccgccgtcgag
accccgcccgccgtctcgcaggtcccgctgttcctgcagcccgacctcgcagcggtcgag
actccgccgcgtcgccggcgcagccgccgggacgccgggaccccggaacccaccaccgag
cagccgcccgtcgccgaaacgcgcgaggaggtgcccgagcccgccaaggccacggacacc
ggaaccgccgacaccgagtcggacgagtccgacgtcgacggcgatcagccgcgtcgtcgt
cgccgcggccgccgcggccgtggtcgtggacggggtgaacagcagaacgagcaggacacg
gacatcgacaccgagggtgccgaggccgaggaatctgcgcgggaatccgttcgcgaggag
aaggccgccgagacaccgactcgggagcccgaagagaagccgaagaaggattccgaggag
cagcccgcgggggccgagcaggccgaagcggagtccggtgacgaagagaccggtgagggt
gactccgacgggtcgagccgtcgccgtcgccgccgtcgccgtcgcaagtccggtggcgag
gggtcgggagaggccacgtccgaggacgatccgccgaacaccgtcgtccacgagcgtgaa
cctcgcaacaagagccgctcgaaggacgaggtccagggcatcacggggtcgacacggctc
gaggcgaagcgtcagcgtcgccgcgacggccgcgatgccggccgcaggcgcccaccgatc
ctcacggaatcggagttcctggcccgccgcgaggccgtcgaccgagtgatggtggtgcgc
gaccgcatcgccaccgggcaaccgcacgcgacgacgcaggtcgccgtgctcgaagacggc
gttctcgtcgaacacttcgtgaccacgtcggcgtcggcgtcgatggtcggcaacgtgtac
ctcggacgcgtccagaacgtgctgcccagcatggaagccgcgttcatcgacatcggccgc
ggccgcaacggcgtgctgtacgcgggtgaggtcaactgggaggctgccgggctcggtggc
aactcccgcaagatcgagcaggcgctcaagccgggcgaccaggtgctggtccaggtcagc
aaggacccggtcgggcacaagggtgcacggctgacgacgcagatcagcctcgcgggccgc
ttcctcgtgtacgtgcccggcggcacgtccaccggtatcagccgcaaactgcccgacacg
gaacgcaagcgcctcaaggacatcctgcgcgacatcgtgccctcggacgccggagtcatc
atccggaccgcgtccgagggggtgagcgaggaagaactcgcccgcgacgtgaagcgtctg
caggaccagtgggccgggatcgaggctcaggccgcgaaggcggaatccggtaagtccggc
aacccgcaggccctgtacgaggagcccgaccttctcgtgaaggtcatccgcgacctgttc
aacgaggacttctccaagctcgtgatcgagggagacaaggcctggtcgacggtcgagtcg
tacatcaggtccgtcgcccccgacctcatgccgaggctcgagcagcacacgtcggacaac
ggtgtcgacgtcttcgaggcgcaccgcatcgacgagcagctggcgaaggcactcgaccgc
aaggtctggttgccctccggtggcacgctcgtgatcgaccgcaccgaggccatgaccgtg
gtcgatgtcaacaccggcaagttcaccggtgccggcggaaacctcgaggagaccgtcacc
cggaacaacctcgaggcggccgaggagatcgtccggcagatgcgcctgcgcgacatcggc
ggcatgatcgtcgtcgacttcatcgacatggtgctcgaatcgaaccgcgatctcgtgctg
cgacgcctgacggaggccctgggccgggatcgcacccgccaccaggtgtccgaggtcacg
tcgctgggcctggtccagatgacgcggaagaagctgggcaccgggctggtcgaggcgttc
tcgacgacctgtgagcactgccacggccggggcatcgtcgtccacgccgagccggtcgag
gtgaagacctccgaggacaacggtgcgcgcgggtcgtcccgcggcggcgactccggcggc
tcccgaaagaagcggggccgcgacaagtcgtccggtggggagacgtcgcagcctcccgtg
cacgaagagaccccgacggtggatgccaccgtcaagcgggcccacccggtcgctctcgcg
atggcacaccaccatcacgaggaggaggccgcgcacgcacacagcgggcacgaggcggaa
tccgccgagcagcccgcggcggcggttcccgagccccagcagcctgtcgccgccgaggcg
gagacaccggcggcagacctgcccggcatcgaagaagccgtggccgaggccccggcagcg
gtcgctgcggaagccgtcgtggcacccgaggcggaggacaccgtcgccgaggaagcggtc
gtcgaagaagccgtggcggaagagactgtggccgaggagccggccgtcgaagccgcaccg
gccgaagccgcaccggccgaagcggctccggtcgccgagaccccggaacccgtcgtggag
cccgagccccagccggagccggtggccccgccgcggcgaaggagccgtcgggtgtcgaga
gcagcggcagcgccggtgtccgaaaccccgagcgcggggacggtgttcgtgatcccgaca
tcggagaccggcgccgagcacgcaccggagccggaaccggccatgtcggcgtcggccgtg
agtgcgccgccggcgtcctcgcccgacggcggggattcgcaggcatcgccgcgcaggccg
cgtcgtcgccgggccgcggcacgtcccgccggcccgccggtggacgccgacaactga
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