Rhodococcus sp. JVH1: JVH1_30830
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Entry
JVH1_30830 CDS
T10360
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rhoj Rhodococcus sp. JVH1
Pathway
rhoj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhoj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JVH1_30830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhoj03019
]
JVH1_30830
03400 DNA repair and recombination proteins [BR:
rhoj03400
]
JVH1_30830
Enzymes [BR:
rhoj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JVH1_30830
Messenger RNA biogenesis [BR:
rhoj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JVH1_30830
DNA repair and recombination proteins [BR:
rhoj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JVH1_30830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
HEM4
Pribosyltran
KORA
Motif
Other DBs
NCBI-ProteinID:
XEM92472
LinkDB
All DBs
Position
1:complement(6627026..6629125)
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AA seq
699 aa
AA seq
DB search
MTTATEPALRDEAERLLRELAGEHATLRDDQWTAIEALVVGRRRALVVQRTGWGKSAVYF
IAAKLLRAHGHGPTVIVSPLLALMRNQVASAERAGVRAATINSGNVTEWDDIHARVADNE
LDVLLVSPERLNNPDFRDQVLPSLAADAGLVVVDEAHCVSDWGHDFRPDYRRIRTLIAEL
GEGIPVLATTATANDRVVSDVSTQLGVGGAETLVLRGGLERESLHLSVVQIPEATARAAW
LAQKLDSLPGSGIIYALTVSAARDLASLLSEQGHTVAAYTGQTDAAERETLEQDLLGNRV
KALVATSALGMGFDKPDLGFVVHLGAPSSPISYYQQVGRAGRSTDRAEVILLPGSEDKQI
WSYFASVAFPREHVVRRVIEVLDTDRPQSTQALEPLVELGRTRLEMVLKVLDVDGAVRRV
RGGWVGTGEPWTYDADRYERLERARESEQQAMIDYQRISTCRMAFLREQLDDPGLAAGTS
DCGRCDNCTGVRHDATVDAEAVQQTRMRLERPGVDLAPRKQWPTGLAKLGVALSGKITDG
PEPGRVLGRLSDLGWGQRLRSLLDEPDGPAPEAVLKACIQVLASWDWAERPTAVMAVESA
THPLLSASIAGQLAAVGRLTDLGVLRLRPEHPPVSAANSAYRVAGLVDAWEAPDLPAGAG
PVLLVDTLTDTGWTLTMAARTLRAAGAASVLPFALASLK
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccgccaccgaacccgcactccgtgacgaggccgaacggctgctccgcgagctg
gcaggcgagcacgccaccctccgcgacgaccagtggacggcgatcgaggcgctcgtggtg
ggccgcagacgggcgctggtcgtccagcggacgggctggggcaagtcggcggtctacttc
atcgcagcgaagctcctgcgggcgcacgggcacggtcccacggtcatcgtgtcgccgctc
ctggcactcatgcggaaccaggtggcctccgccgagcgggccggcgtgcgcgccgccacc
atcaactcgggaaacgtcaccgaatgggacgacatccacgcccgggtcgccgacaacgag
ctggacgttctgctggtcagccccgagcgtctcaacaatcccgacttccgcgaccaggtc
ctcccctccctcgccgccgacgcgggcctcgtcgtggtcgacgaggcgcactgcgtgtcg
gactggggtcacgacttccgccccgactaccggcggatccgcactctgatcgccgaactg
ggcgagggcatccccgtgctggccaccacggccacggcgaacgaccgcgtcgtctccgac
gtctccacgcagctcggggtgggcggcgccgaaactctcgtcctccgcggtggcctcgaa
cgggagtcgctgcacctgtcggtcgtgcagattccggaggccaccgcccgggcggcgtgg
ctcgcccagaagctcgacagcctgcccggctcgggcatcatctacgcactcaccgtgtcg
gcggcgcgggatctggcgagcctgctgtccgagcagggccacacggtcgccgcgtacacc
gggcaaaccgacgccgccgagcgcgagaccctcgagcaggacctgctcggcaaccgcgtc
aaggccctcgtcgcgacgtccgcgctcggcatggggttcgacaagcccgacctggggttc
gtcgtgcacctcggtgcgccctcgtcccccatctcctattaccagcaggtcgggcgcgcg
ggacggtccacagaccgcgccgaggtcatcctgctgcccggatccgaggacaagcagatc
tggagttatttcgcgtccgtggcgttcccccgcgagcacgtggtgcgccgggtgatcgag
gtcctcgacaccgaccggccgcagtccacgcaggcgctcgagccactggtggagctgggc
cgcacccggctggagatggtgttgaaggtcctcgacgtggacggtgccgtccgccgggtg
cgcggcggctgggtgggcaccggggagccctggacgtacgacgccgaccgctacgagcgg
ctcgagcgcgcccgcgagtccgagcagcaggcgatgatcgactaccagcggatcagcacg
tgccggatggcgttcctgcgcgagcagctcgacgacccgggtctggcggcgggaacctcg
gactgcggccggtgcgacaactgcaccggagtgcgccacgacgcgaccgtggacgccgag
gcggtgcaacagaccaggatgcgtctcgagcggccaggcgtggacctcgcgccccgcaaa
cagtggcctacgggcctcgcgaagctcggcgtggcgctgtccgggaagatcacggacggc
cccgaaccgggccgcgtcctgggccggctgtccgacctgggctggggtcagcggctgcgt
tccctgctcgacgaaccggacggacctgcgcccgaggccgtcctgaaggcctgcatccag
gtgctggcctcctgggactgggccgagcggcccaccgccgtcatggcggtcgagtccgcc
acccatccccttctgtcggcgtcgatcgcggggcagctcgccgctgtcggacggctcacc
gacctgggagttctgcggctgcgcccggagcatccgccggtgtccgcggccaactccgcc
taccgggtggccgggctggtcgacgcctgggaggcccccgaccttcctgccggcgccgga
ccggtgttgctcgtcgacaccctcacggacaccggctggaccctcacgatggccgccagg
acgctccgcgcggcgggtgccgcgtcggtcctccctttcgcgctcgcgagtctcaaatag
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