Rhodococcus sp. JVH1: JVH1_32095
Help
Entry
JVH1_32095 CDS
T10360
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rhoj Rhodococcus sp. JVH1
Pathway
rhoj03030
DNA replication
rhoj03430
Mismatch repair
rhoj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhoj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JVH1_32095
03430 Mismatch repair
JVH1_32095
03440 Homologous recombination
JVH1_32095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhoj03032
]
JVH1_32095
03400 DNA repair and recombination proteins [BR:
rhoj03400
]
JVH1_32095
Enzymes [BR:
rhoj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JVH1_32095
DNA replication proteins [BR:
rhoj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JVH1_32095
DNA repair and recombination proteins [BR:
rhoj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JVH1_32095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
GIY-YIG
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
XEM92713
LinkDB
All DBs
Position
1:complement(6858516..6860282)
Genome browser
AA seq
588 aa
AA seq
DB search
MSVPGVPEQLRFDELDTPLRDTTFVVVDLETTGARPGEDAITEIGAVKIRGGEVIAEMAT
LVDPGRSIPPHIVEITGITTAMVIDAPRIERVLPAFLEFARGAVLVAHNAPFDTGFLKAA
ASATDTPWPKFTVLCTVKLARRVLSRDEAPSVKLSSLARLFDVGTTPTHRALDDARATVD
VLHALIARVGNQGVHSLTELVDYLPDVSSHQRAKRSLAGHLPHAPGVYLFRGPSDEVLYV
GTATDLRRRVRNYFTGSETRGRMKEMVALTTRIDHVECAHALEAGVRELRLLAAHTPPYN
RRSKYPKRGWWITLTVEAFPRLSVVRTPTADSLGPFRSRSTAVDVADVLAEYCILRTCTS
RIPKGREHGPQCPPRELAGCPASVHDRATEDAYRPGPELFRQFLRGLDDAPLHRMRARVE
ELAAGELFENAARLRDRTAEVVLALRRMQRLAALTALDQLVAARPAATGGWEFAVIRSGR
LASAGCARRGIHPMPVVDALVLTAETVVPDVTPLRGASPEEAGLLARWLDQEDTRIVSAS
AGWCEPARGAGSWSEWCALARAGSASTRDAESRPPAPGSADHRLGWRS
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgtccccggtgtacccgaacagctgagattcgacgagctcgacaccccactgcgg
gacaccacgttcgtggtggtcgatctcgagaccaccggagcgcggccgggcgaggacgcc
atcaccgagatcggcgccgtgaagatccgcggtggcgaggtgatcgccgaaatggccacc
ctcgtcgacccgggacggtccattcccccgcacatcgtggagatcaccggcatcaccacc
gccatggtgatcgacgccccgcggatcgagcgagtgctgccggcgttcctggagttcgca
cgcggggcggtgctcgtcgcgcacaacgccccgttcgacacaggcttcctcaaggccgcc
gcgtccgcgaccgacaccccctggcccaagttcaccgtgctctgcaccgtcaaactggcc
cggcgcgtcctcagccgcgacgaagcgccgtcggtcaagctgtcgtcgctggcccggctg
ttcgacgtcgggaccactccgacccaccgcgcactcgacgacgcccgtgccaccgtcgac
gtcctgcacgccctcatcgcgagggtcggcaatcagggagtgcacagtctcaccgagctc
gtcgactaccttcccgacgtctcctcgcaccagcgggcgaaacgctcgctcgccggccat
ctcccccatgcccccggcgtctacctcttccgcggaccgtccgacgaggtcctgtacgtc
ggcacagccaccgatctgcgccggcgggtgcgcaactacttcaccggctccgagacgcgc
ggccggatgaaggagatggtggcgctgaccacccggatcgaccacgtcgagtgcgcgcac
gcactcgaggccggtgtgcgcgagctccggctgctggcagcgcacacgcctccgtacaac
cggagatccaagtacccgaaacgcggctggtggatcacgctcaccgtggaggccttcccc
cggttgtcggtggtgcgtaccccgaccgccgactcgctcggtccgttccggtcgcgctcg
accgccgtcgacgtcgccgacgtcctcgccgagtactgcattctccgcacctgcacgagc
cgcatcccgaagggaagggagcacggtccgcagtgcccaccccgcgagctcgcaggctgc
ccggcgtccgtccacgaccgtgccacggaggacgcctaccgtcccggaccggaactcttc
cggcagttcctgcgcggcctggacgacgcgccgctgcaccgcatgcgcgcacgggtggag
gagctggccgcaggcgagttgttcgagaacgccgcacgcctgcgtgatcgcaccgccgag
gtcgtgctcgcgttgcggaggatgcagcgcctggccgccctcaccgcgctcgatcagctc
gtggccgctcgcccggccgcgaccggcggctgggagttcgcggtgatccgttccgggcgg
ctcgcgtccgcgggctgcgcgcggcgcggaatccacccgatgccggtggtcgatgcgctc
gtcctcaccgccgaaaccgtcgttcccgacgtaactccgctccgcggcgcgtcccccgag
gaggccggactgctggcgcgctggctcgaccaggaggacacccgcatcgtcagcgcctcc
gcgggctggtgcgagcccgcacggggcgccggatcctggtccgagtggtgcgcactcgcg
cgagcggggagcgcgtcgacacgggacgccgagagccgaccacccgcaccgggttccgcc
gaccaccgcttaggctggcgatcatga
DBGET
integrated database retrieval system
