Rhodoluna sp. KAS3: RKAS3_01960
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Entry
RKAS3_01960 CDS
T09960
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhok
Rhodoluna sp. KAS3
Pathway
rhok03420
Nucleotide excision repair
rhok03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RKAS3_01960
03430 Mismatch repair
RKAS3_01960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhok03400
]
RKAS3_01960
Enzymes [BR:
rhok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RKAS3_01960
DNA repair and recombination proteins [BR:
rhok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RKAS3_01960
MMR (mismatch excision repair)
Other MMR factors
RKAS3_01960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
AAA_22
AAA_11
ResIII
AAA_16
DEAD
Motif
Other DBs
NCBI-ProteinID:
BDS48619
LinkDB
All DBs
Position
190300..192606
Genome browser
AA seq
768 aa
AA seq
DB search
MSELDLFSNAFGASERLVEGLNPQQRAAVEYRGPALLIVAGAGSGKTRVLTHRIAHLLAN
REAWPSQILAITFTNKAAAEMRERVKDLLGEAADGMWLKTFHSACVLILRREAERLGHDS
NFTIYDSGDSRAILKRLIKDTAADIHKLTPAGVASVISNAKNELADAESFARNADMNDPV
ARVISEIFTRYQAELRRNNAFDFDDLIGETVHLFRAFPDVLARYQEKFKHILVDEYQDTN
HAQYALIRELAAKASLTVVGDSDQSIYAFRGADIRNITEFEKDFPGAKTILLEQNYRSTQ
NILSAANAVISNNFDRPAKNLWTASGDGEKIVGYTGYSAHDEAQFIADEINKLHREGMNY
RDIAVMYRTNSQTRALEDIFVRSALPYRVVGGTKFYERQEIKDAMAYLVAISNNRDDLAT
RRILNVPKRGIGDASETQIANFAARNELSVRQVLGHVNELGFGPKITTAITQLSDLLNEL
EAGIESTPVDVILRSVLERTGYIDALRASRDPQDEARVENLEELVSVTREFQRNNPEGRL
PDFLNEVALVAAADEIDDESGTVSLMTLHTAKGLEYDAVFLTGIEEGLLPHRMSFLTPGG
MAEERRLFYVGITRARKKLHISLAMMRTTFGDSEASTPSRYLQEIPDSLIDWRESGAGSG
RGLPSGRYRNSIADDQGYGSSSGGSSGGYGGTPSTKPKTEWKGAISSVRNNEGLQLTAGE
FVMHADFGKGKVIATAGEGARQTAEIHFGSIGVKRLLVKVAPIEKLEA
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcttgatcttttttctaatgcctttggggcaagtgagcgcctcgttgagggc
ctaaacccgcagcagcgcgctgccgtcgaataccgcggacccgcgctgcttattgttgcc
ggtgctggttcgggcaagactcgagtactgactcaccgcattgcgcacctgcttgccaac
cgcgaggcatggccgtcacaaatcttggcaattacctttaccaacaaggctgcggcagag
atgcgcgagcgcgtcaaagacctgctgggtgaggcagccgacggcatgtggctcaagact
ttccactctgcctgcgttttgattctgcgccgcgaggccgaacgcctgggtcacgattca
aacttcactatttacgactcaggtgacagccgcgcaattcttaagcgcctgatcaaagac
accgcagctgacatccacaagctgactccggccggcgtggcatccgtgatttccaacgcc
aaaaatgagcttgccgacgccgagtcatttgcgcgcaacgcagacatgaatgacccagtg
gcccgggtaatttctgaaatcttcacccgttaccaggctgagcttcggcgcaataatgcc
tttgacttcgatgacctgatcggtgagacggttcacctattccgtgcgttcccagatgtt
ctggctcgctaccaagagaagttcaagcacatcttggttgatgagtaccaagacaccaac
cacgcgcagtacgcactgattcgtgagttggcggccaaggcttcactaaccgtggtgggt
gactccgaccagtcaatttatgccttccgtggtgccgacatccgcaacatcaccgaattc
gaaaaagactttccgggtgccaaaaccatcctccttgagcaaaactatcgctcaacccaa
aacatcctttcggcagcgaacgcggtaatttcaaacaactttgaccgccctgccaaaaac
ctgtggactgcctctggtgacggcgagaagatcgtcggttacaccggctattcggcgcac
gacgaggcccagttcatcgccgatgaaatcaacaaactgcaccgtgagggcatgaactac
cgcgacatcgcagtcatgtaccgcaccaactcgcagactcgagcacttgaagacattttt
gttcgttctgcactcccgtatcgcgttgtcggtggcaccaagttctacgagcgtcaagaa
attaaagacgcaatggcctaccttgtggccatcagcaataaccgcgatgacctagctacc
cgccgaattttgaacgtgccaaagcgcggtattggtgacgccagcgaaacccagattgcc
aacttcgcggctcgcaacgagctgtcggtgcgccaggttttgggtcatgtaaacgagctg
ggttttggcccaaaaatcaccaccgccatcacccaattgtctgacctactaaatgagctt
gaagcgggcattgagtcaacaccggttgacgttattttgcgttcggttcttgagcgcacc
ggctacatcgatgccctgcgtgccagccgcgacccacaggatgaagctcgagttgagaac
ctcgaggaacttgtttcggtgactcgagagttccagcgcaataacccagaaggccgactt
cctgatttcttgaacgaggttgcactggtcgctgccgctgatgagatcgatgacgagtcg
ggaaccgtctcactcatgactttgcacacggcaaagggtcttgagtatgacgccgtgttc
ttgaccggtatcgaagaggggctcctgcctcaccgcatgtcattcttgactccgggtgga
atggctgaagaacgccgcctcttttacgtgggcatcacccgagcccgcaaaaaacttcac
atcagtttggcaatgatgcgcaccacctttggcgattctgaagcatcaactccaagccgc
tatttgcaagaaattccagattctctaattgactggcgtgagtcaggtgcaggttcgggc
cgcggcctacctagcggccgctaccgcaactcgattgccgatgatcagggttacggctct
tcatcgggcggctcttctggtgggtatggcggcacgccatcgaccaaacccaagactgag
tggaagggcgccatcagctcggtccgcaacaacgaggggctgcaacttacagcgggcgag
tttgtaatgcacgccgactttggcaagggcaaggttattgccaccgccggggagggcgcg
cgtcaaaccgctgagattcacttcggcagcatcggtgtaaagcgcttgttggtaaaggtt
gcaccaatcgaaaaactagaggcttag
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