Rhodoluna sp. KAS3: RKAS3_09530
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Entry
RKAS3_09530 CDS
T09960
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhok
Rhodoluna sp. KAS3
Pathway
rhok03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RKAS3_09530 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhok03400
]
RKAS3_09530 (mfd)
Enzymes [BR:
rhok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RKAS3_09530 (mfd)
DNA repair and recombination proteins [BR:
rhok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RKAS3_09530 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BDS49376
LinkDB
All DBs
Position
complement(977611..981147)
Genome browser
AA seq
1178 aa
AA seq
DB search
MSTQNLKALSRLGALVSEGYPFASLQAKIKNSRVDLIAPQGAHPVILDVISKFRADAKLS
RTQLVVVATGREGEDVAAALRDLDPTAEILEFPSWETLPHERLSPSPETVGRRLQVLHRL
NALKAEAPDHEVYVIASVRAVLQPVVAGLAAHPPLTLEIGQEYPLFELPLKLVEIAYHRV
DMVTRRGEFAVRGGILDIFPTTAEHAMRLEFFGDEIEEIRQFSVADQLSIEGKVESIQVY
PAREIIITPNVASRAREMLHEFPNISSMLAKLSEGIPVDGMESLAPVLVDRMVPLSDYLP
SDTLVTLLSPEKSAARAASLVETNEEFLHAAWDAATEGANAPIDLSAGGFVELSQFKDAL
DGRPMFTVSQFGADDETLVNLGLLEVPNFKGLETTSIEWLEDQAKAGNHVVLVAEGHGTV
ERLQEQMVAAKITADVVQASLRKGFTAPESNLIVITEAEFYGKSSVYVSPTVRKLATKRG
QAVDPLTLKAGDYVVHETHGIGRFVELVQRASGVGKMQSQREYLLIEYAPSKRGYPGDTL
FVPTDQLDLLTRYVGGEAPVLSKMGGTDWARVKGNARKAIRKIAIDLVKLYSARMKSKGH
AFGPDTPWQHELEEAFAFVETPDQLTTIDEVKRDMEREVPMDRLLAGDVGYGKTEVAVRA
AFKAIQDGKQVAMLVPTTLLVRQHTDTFESRFAGFPVNVRSLSRFQTAKEVKETIAGLAD
GSVDMVIGTHRLLSESVKFRQLGLIIIDEEQRFGVEHKEKLKEMKTNVDILSMSATPIPR
TLEMAITGIREMSTLATPPEERHPILTYIGGYSEKQVAAAIRRELIREGQVFFVHNRVST
IEAVANQLAELVPEARIAVAHGQMTETALEQVVVDFWERKFDVLVSTTIIETGIDIPNAN
TLIVDRAENFGLSQLHQIRGRVGRSRERAYAYFFYSPDKPLSETAHDRLATIALNNELGG
GMQIAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRMIGEAVADFKGEKTESPAELKLEL
PVDAHIPNTYVDSERLRLEAYHKLSAASGEKGSRKQLDAILAELEDRYGKAPDSVKNLIE
VTELRQQANRLGLKDLNVLGLQVKLQPVVIDEAQQVALTHLFPGIKYLQSAQTLMVPAPR
DANFEPLRDQAIIDWVWAFLARVFPPKPDSESDPQKAK
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtgagtacgcaaaatctcaaggccctttcgcgccttggcgcactcgtttcagagggatac
cccttcgcctcactgcaggcaaaaatcaaaaattcacgcgtagatctgatcgctccgcag
ggcgctcatccggttattttggatgtcatctcaaagttcagggcagatgccaaactgtcg
agaacccaacttgttgtggttgccactggacgcgagggtgaagacgtggcagccgctctg
cgtgatcttgatccgaccgcagagattctcgagtttccttcttgggagaccctgcctcat
gagcgcctaagcccgagtcccgaaaccgtcggccgaagactccaggttttgcaccgtttg
aatgcgctaaaggctgaagctccagatcacgaggtttacgtgattgcatcggtccgcgcg
gttctgcagccggtggtcgctgggttggcggctcatccgccactaacccttgagattggc
caagagtacccgctcttcgaattgccactcaagctagtcgaaatcgcgtaccaccgagtc
gacatggtcaccagacgcggtgagtttgcggttcgcggtggaattctggatatttttccg
accacagctgagcatgcgatgcgtctcgaattttttggcgatgagatcgaggagattcgt
cagttctcggtagctgaccagctctcaattgaaggcaaagtcgagtccattcaggtctac
ccagcgcgagaaattatcatcacgccgaatgtggcaagtcgcgcacgcgagatgcttcac
gagtttcccaatatttcttcgatgctggcaaagctctccgagggcattcctgtggacggc
atggaatcgcttgcgccagtcctagtcgatcgtatggttccgcttagcgattacctaccg
agtgacaccctcgtgaccctgttgtcacccgagaagtcggctgcgcgtgccgcaagtttg
gtcgagaccaacgaagagtttttgcatgccgcgtgggatgctgcaaccgagggcgccaac
gcgccaatcgatctcagtgctggtgggtttgttgaactatcgcagttcaaagatgcattg
gatggacgcccgatgttcacagtgtctcaatttggcgcagatgacgaaactctggtgaat
ttggggctgcttgaagtaccgaatttcaaggggctcgaaaccacctcaatcgaatggttg
gaagaccaggccaaggccggcaatcacgtggtcttggttgctgaggggcacggaaccgta
gagcgcctgcaagagcaaatggtggctgccaaaattaccgcggatgtggtgcaggccagt
ttgcgcaaaggcttcaccgctcctgaatccaatttgattgtgattaccgaagctgagttc
tacggcaagagttcggtttacgtgagcccaactgttcgcaagcttgcgaccaagcgcggc
caggcggtcgacccactcacgctcaaagcaggggactacgtcgttcacgagacccacggc
atcggccgatttgttgaacttgttcagcgcgccagtggcgttggaaaaatgcaatcccag
cgcgagtatcttctaatcgagtacgcgccatccaagcgcgggtatccgggtgacactctg
tttgtgccgaccgatcaattggaccttttgaccaggtatgtcggcggtgaagccccggtt
ctgtcgaaaatgggtggaaccgactgggctcgagtcaagggcaacgcccgcaaggctatc
cgcaagattgcgattgacctggtcaagctctattccgcacgcatgaagtcaaagggtcat
gcttttggcccagataccccttggcaacatgaacttgaagaggcgtttgccttcgttgag
actccagatcaattgaccaccatcgatgaggtcaagcgcgacatggagcgcgaggttccg
atggaccgcctgttggccggcgatgttggctacggcaaaactgaagtcgcggttcgagca
gcgttcaaggccattcaggatggcaagcaggttgccatgttggtccccaccaccctgttg
gtccgtcagcacaccgatacatttgagtcgcgctttgcaggtttccctgttaacgtccgt
tcgctatctcggttccaaacagccaaagaagtaaaagagacaatcgccggtttggccgac
ggttcagtcgacatggtgattggaacccatcgactcttgagcgaaagcgtcaagttccgc
cagcttggtttgatcatcatcgatgaggaacagcgctttggtgttgagcacaaggaaaag
ctgaaagagatgaaaactaacgtcgacatcctttcgatgtcggcaaccccgattccgcga
accttggaaatggcgattaccggtattcgagaaatgtcaacgttggcgacgccacccgaa
gaacgtcacccgattttgacctacatcggtggttactctgaaaagcaagttgcagcggcg
attaggcgcgaactgatccgtgaaggtcaggtgttcttcgtgcacaaccgggtcagcact
attgaggcggttgccaaccaactcgccgagttggtgcccgaggcgagaattgccgttgct
cacggccagatgacagagaccgcacttgagcaggtggtggttgatttctgggagcgcaag
tttgacgttttggtgtcgaccacgattatcgaaaccggtatcgatataccgaatgccaac
actctgatcgttgaccgagcagagaactttggattgagtcagctgcaccaaattcgaggg
cgagttggtcgaagcagagagcgagcctatgcgtacttcttctattcgccagataagccg
cttagcgaaacagcgcacgaccgattggcaacaatcgcactgaataatgaactcggtggc
ggaatgcagattgctatgaaggaccttgaaattcgaggagcgggaaaccttctgggcggt
gagcagtccggccacatcgcaggtgtgggatttgacctttatctgcgcatgatcggtgaa
gctgttgccgatttcaagggtgagaagactgaatctccagccgaacttaagctcgaactg
ccggtcgatgctcatattccaaacacctatgtcgatagcgagcgcttgcgcctagaggcc
tatcacaagttatccgctgcgagcggcgagaagggttctcgtaagcaacttgacgctatt
ctggctgaacttgaggaccgctacggcaaggcgccggattcagttaagaacttgattgaa
gttacagaacttcgccagcaggccaaccgattgggactcaaggacctaaatgttctgggt
cttcaggtcaaactccaaccggtggttatcgatgaagcccagcaggtggccctaactcac
ttgttcccgggtattaaatatctccaatcggcccagaccctgatggttccggcgccaaga
gacgctaactttgaaccattgcgagaccaagccatcatcgactgggtgtgggctttcttg
gcaagagtgtttccgccaaaaccagattctgaatctgatcctcagaaagccaaatga
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