Rhodopseudomonas sp. BAL398: RBJ75_01395
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Entry
RBJ75_01395 CDS
T10316
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhol Rhodopseudomonas sp. BAL398
Pathway
rhol03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RBJ75_01395 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhol03400
]
RBJ75_01395 (ligD)
Enzymes [BR:
rhol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RBJ75_01395 (ligD)
DNA repair and recombination proteins [BR:
rhol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RBJ75_01395 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
WOK18210
LinkDB
All DBs
Position
304736..307519
Genome browser
AA seq
927 aa
AA seq
DB search
MAQKNLNLYRSKRDFETTAEPSGEGAVTPSKRRRFVIQKHDATRLHYDLRLEFDGVFKSW
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWDCDDPARGF
KKGDLKFTLEGEKLHGGFVLVRMRHDRNGGKRTNWLLIKHRDDDASDGDGEAILKQDRSV
ASGRSMAEIAAGKGRAPKPFMTGKAARVKPDAVWDSNKGLAAEERAANGKTAKPAKTKAA
KTKTAKAAKTKAAKPTSAKAKTKPKSAGKAAAAMPGFIAPQLCTLVARPPGADGWGHEIK
FDGYRMQLRVASGKATLKSRKGLDWTDKFQAIAEEAAALPDVIIDTEVVALNSDGHPDFS
ALQAALSDETTDNLICFAFDLLYADGEDLRALPLWQRKQRLDELLKATRGRRKQKLIRYV
DHFESGGDAILQSACKLSLEGIVSKRLDAPYRSGRSDSWTKAKCRAGHEVVIGGWKTTAG
KFRSLLVGVHRDDHLAYVGIVGTGFGQDTVKRIMPALKAAASKHSPFGGDNAPAKSADTH
WVRPELVAEIEFAGFTGAGMVRQASFKGLRADKPAEEVEAEQPAKVAIAKPTGGAKDSRK
TGSKAGAKAGAKASVKAGPQAASKSGRAEVMGVAISKPDKALWPGDDGAPVTKFDLADYF
AAVGDWMMPHIKGRPCSIVRAPDGIDGQQFFQRHAMPGTSNLLELVKVSGDRKPYLQIDR
IEGLAAVAQIGGLELHPWNCAPGRPEIPGRLIFDLDPAPNVDFAAVIAAANEMRERLTAV
GLESFCKTTGGKGLHVVTPLRAGAKDKVDWKQAKAFAQAMCQRMASDSPQLYLLNMSKKQ
REGKIFLDYLRNDRMSTAVAPLSPRARPGATVSMPITWAQVKNGLDPKRYRIGTVPGLLA
KSKAWADYDKAEAPLKAAMSKLASSGN
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcagaagaatctgaatctgtatcgcagcaaacgcgatttcgagaccaccgcggag
ccctccggcgagggcgcggtgacgccgtcgaagcggcgacgcttcgtgatccagaagcac
gacgccacgcggctgcattacgatctgcggctggaattcgacggcgtgttcaaatcctgg
gcggtgacgcgcgggccgtcgctcgatccgcatgacaagcggctcgcggtcgaggtcgag
gatcacccgctggattacggcgatttcgaaggcacgattccgaagggccaatatggcggc
ggcacggtgcagctgtgggaccgcggctattgggattgcgacgatccggcgcgcggtttc
aagaagggtgatctcaaattcaccctggagggcgagaagctgcatggcggcttcgtgctg
gtgcggatgcggcacgaccgcaatggcggcaagcgcaccaattggctgctgatcaagcat
cgcgacgacgacgcaagcgacggcgacggcgaggcgatcctcaaacaggatcgctcggtg
gcgtcgggacggagcatggcggagatcgccgccggcaagggccgcgcgccaaaaccgttc
atgaccggcaaggccgcgcgggtgaaacccgacgcggtgtgggattccaacaaggggctg
gcggccgaggagcgcgccgcgaacggcaagacggccaagcctgccaagacgaaggcggcg
aagaccaagaccgcgaaggccgcgaagaccaaggccgccaagccgacctcggccaaggcg
aagacaaagccgaagtccgcgggcaaagccgcggcggcgatgccgggattcatcgcgccg
caattatgcacgctggtcgcgcgcccgcccggcgccgatggctggggccatgagatcaag
ttcgacggctatcggatgcagctgcgcgtcgcttccggcaaggccacgttgaagtcccgc
aaggggctggactggaccgacaagtttcaggcgatcgcggaggaggccgcggcgctgccc
gatgtcattatcgacaccgaggtggtggcgctcaacagcgacggccatccggatttttcc
gcgctgcaggcggcgctgtcggacgagacgacggacaatctgatctgctttgccttcgac
ctgctgtacgccgatggcgaggatttgcgcgctctgccgctgtggcagcgcaagcagcgg
ctcgatgagctgctcaaagccacgcgcggccggcgcaagcagaagctgatccgctatgtc
gatcatttcgaaagcggcggcgacgccatcctgcaatcggcgtgcaaactatcgctggaa
ggcatcgtgtcaaaacggctcgacgcgccatatcgctccggccgcagcgacagctggacc
aaggccaagtgccgcgccggccatgaggtggtgatcggcggctggaaaaccaccgcgggc
aaattccgctcgctgctggtcggcgtgcatcgcgacgatcacctggcctatgtgggcatc
gtcggcaccggcttcggccaggatacggtgaaacgcatcatgccggcgctgaaagccgcc
gccagcaagcacagcccgttcggcggcgacaatgcgccggccaagagcgccgacacgcat
tgggtgcggccggagctggtggccgagatcgaattcgccggcttcaccggcgccggcatg
gtgcggcaggcgtcgttcaaggggctgcgtgccgacaagccggccgaggaggtcgaagcc
gagcagccggcgaaggtcgccatcgccaagccgacaggcggcgccaaagacagtcgcaag
accggcagcaaggcgggcgccaaggccggtgccaaggccagcgtcaaggccggtccccag
gccgccagcaaatccggccgggccgaggtgatgggcgtggcgatctccaagcccgacaag
gcgctgtggcccggcgacgatggcgcacccgtcaccaaattcgatctcgccgactatttc
gccgcggtcggcgactggatgatgccgcatatcaagggccggccgtgttcgattgtgcgc
gcgccggacggcatcgacggccagcaattcttccagcgccacgccatgccgggcacttcg
aacctgctcgaactggtcaaggtctcgggcgatcgcaagccctatctgcagattgatcga
atcgagggcctggcggcggtggcgcagatcggcggtctcgagctgcatccgtggaattgc
gcgccgggccggccggaaattccgggccggctgatcttcgatctcgatccggcgccgaat
gtcgacttcgccgcggtgatcgcggcggcgaacgagatgcgcgaacggctgaccgctgtc
ggcctcgagagtttctgcaaaaccaccggcggcaaggggctgcatgtggtgacgccgctt
cgggccggggcgaaggacaaggtcgactggaaacaggccaaggctttcgcgcaggcgatg
tgccagcggatggcgagcgacagcccgcagctttatctgctcaacatgtcgaagaagcag
cgcgagggtaagatctttctcgactatctgcgcaatgaccggatgtcgaccgcggtcgcg
ccattgtcgccgcgcgcccggcctggcgccaccgtctcgatgccgatcacctgggctcag
gtgaagaatggactggatcccaagcgctatcgcatcgggaccgtgccgggcttgctggcg
aagagcaaggcttgggcggattatgataaagcagaagccccgctgaaggcggcgatgagc
aagctcgcctccagcgggaattga
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