Rhodopseudomonas sp. BAL398: RBJ75_20855
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Entry
RBJ75_20855 CDS
T10316
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rhol Rhodopseudomonas sp. BAL398
Brite
KEGG Orthology (KO) [BR:
rhol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhol03019
]
RBJ75_20855 (hrpB)
Enzymes [BR:
rhol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RBJ75_20855 (hrpB)
Messenger RNA biogenesis [BR:
rhol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RBJ75_20855 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
HA2_C
ResIII
AAA_30
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WOK16579
LinkDB
All DBs
Position
4418831..4421467
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AA seq
878 aa
AA seq
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MDTRVKPAYDAALVDRLGPILRAFDTPLPIDAVLDELSRRLADQNAAVLVAPPGAGKTTR
VPLALLDAPWLGTKKIIMLEPRRIAARASAERMARTLGERAGDTVGYRVRFGSKISRATR
IEVVTEGIFTRQIMDDPELTGIAAVLFDEFHERSLDADLGLALARDAQQGLREDLRILVM
SATIDGARVARLLGDAPVIESLGRAFPVETRYLGRKPDAPLERQMAEAIASALRENPGSV
LAFLPGAAEIRRTQTFLAERIHDASIEIVPLFGALDAAVQDRAIQPAPKGMRKVVLATSI
AETSLTIEGVRIVVDCGMARGPRYEPDIGLTRLETVRASRAAVDQRRGRAGRTEPGVCYR
LWDEPQTASLPAYTQPEILSADLSSLLLDLAQWGVADPGALAFLDPPPAPALKEARSLLG
ELGALDADGRITDEGKSLRALALPPRLARMIVDSHRLGAGDAAAAIAAILTERGLGGDSV
DLGARLEQFRRDRTPRATSARQMAQRWASQVASSPSPLRGGWPAEGRSGGGATAKASVRG
TPTPDPSPQGGGELSSGEMLALAFPDRVAKNRGNGSFVLANGRGAAIDRASALARAPYIA
VAEMTGTAAQGRILLAAPIALTEIEARFAAQIAALDEISFDRAALALRGRRKRTLAAITL
SEAPFAVKPSAETARIFADGVVAAGLEKLPWSKSLAQWRGRVMFLRAAEGEAASHSWPDL
SDAGLAENREAWLLPALFDKTALKEVSPGDLSDALIGLLPWELRARLDKEAPTHFEAPTG
TSLPIDYEAEQGPTIAVRLQELFGLTTHPSVAKGAVPLVLELLSPAHRPVQVTRDLPGFW
RGSYAAVRSDLRGRYPRHPWPEDPANAPPTRRVKPRGT
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcgggtcaagcccgcgtatgacgccgcattggtggacaggctgggaccaatt
ttgcgcgcattcgacacccccctaccgatcgacgccgtgctcgacgagctgtcgcgcagg
ctggccgaccagaacgccgcggtgctggtcgcgccgcccggtgccggcaagaccacaagg
gtgccgctggcgctgctcgatgcgccatggctgggcaccaagaagatcatcatgctggag
ccgcgccggatcgcggcccgcgccagcgccgagcggatggccaggacgctgggcgagcgc
gccggcgacaccgtcggctaccgcgtccgcttcggctcgaaaatctcgcgcgcaacccgg
atcgaggtggtgaccgagggcatcttcacccggcagatcatggacgatccggaattgacc
gggatcgccgcggtgctgttcgacgaattccacgagcgctcgctcgacgccgatctcggc
ctggcgctggcgcgcgacgcccagcaggggctgcgcgaggatctgcgcatcctggtgatg
tcggcgaccatcgacggcgcccgggtggcgcggctgctcggcgacgcgccggtgatcgaa
agcctcggccgggcctttccggtcgagacccgctatctcggccgcaagcccgacgcgccg
ctggagcggcagatggcggaggcgattgcgtcggcgttgcgcgaaaatccgggctcggtg
ctggcgttcctgccgggcgccgccgaaatccgccgcacccagacgtttctcgccgagcgg
attcacgatgcgtcgatcgagatcgtgccgctgttcggcgcgctcgacgccgcggtgcag
gaccgggcgattcagccggcgccgaaggggatgcgcaaggtggtgctggcgacctcgatc
gccgagacctcgctgaccatcgagggcgtgcgcatcgtggtcgattgcggcatggcgcgg
gggccgcgctacgagccggatatcgggctgacccggctggagacggtgcgggcctcgcgc
gccgcggtcgatcagcgccgcggccgcgccggccgtaccgagccgggggtctgttaccgg
ctgtgggacgagccgcagaccgcctcgttgccggcctatacccagccggaaatcctcagc
gccgatctgtcgtcgctgctgcttgatctggcgcaatggggcgttgccgacccgggcgcc
ctggcgtttctcgatccgccgccggcgccggcgctgaaagaggcgcgcagcctgctcggc
gaactcggcgcgctcgacgccgacggccgcatcaccgacgaaggcaagagcctgcgcgcg
ctggcgctgccgccgcgattggcgcggatgatcgtcgattcgcaccggctcggcgccggc
gacgccgccgcggcgatcgccgcgattctcaccgagcgcgggctcggcggcgacagcgtc
gatctcggcgcaaggctcgagcagttccgccgcgaccgcacgccacgcgccaccagcgcc
cgccagatggcgcagcgctgggcttcgcaggtggcctcttctccctcccccttgcgggga
gggtggccggccgaaggccggtcgggtgggggggcaacagccaaggcttcggttcgtggc
acccccacccccgacccctccccgcaagggggaggggagttgagcagcggcgaaatgctg
gcgctggcgtttccggatcgggtcgccaagaaccgcggcaatggcagtttcgtgctggcc
aatggccgcggggccgcgatcgaccgggcctcggcgttggcgcgcgcgccctatatcgcg
gtggcggagatgaccggcaccgcggcgcagggccgcatcctgctggcggcgccgatcgcg
ctgaccgagatcgaggcccgcttcgctgcgcagatcgccgccctcgacgagatctctttc
gaccgcgccgcgctggcgttgcgtggccggcgcaagcgcacattggccgccatcacgctg
tcggaagcgcccttcgcggtgaagccgtcggcggagacggcgcgcatcttcgccgatggc
gtggtcgcggccgggctcgagaagttgccgtggtcgaagtcgctcgcccaatggcgcggc
cgggtgatgttcctgcgcgccgccgagggcgaggcggcatcgcattcttggccggatctg
tccgacgccggattggcggagaatcgcgaggcctggctgctgcctgcactgttcgacaaa
accgcgttgaaggaggtctcccccggcgatctgtcggacgcgctgatcgggttgctgcca
tgggagctgcgcgcccggctcgacaaggaggccccgacccatttcgaggcgccgaccggc
acctcgctgccgatcgactatgaagccgagcagggcccgaccatcgcggtgcgcctgcag
gaattgttcgggctcaccacgcatccctcggtggccaagggggcggtgccgctggtgctg
gaactgctgtcgccggcgcatcgcccggtgcaggtgacgcgcgacctgccgggtttctgg
cgcggctcttacgccgcggtgcgctccgacctgcgcggacgctatccgcgccatccctgg
ccggaggacccggccaatgcgccgccgacccgccgggtcaagccgcgcggaacctga
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