Romboutsia hominis: FRIFI_0494
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Entry
FRIFI_0494 CDS
T10242
Name
(GenBank) Toxin secretion/phage lysis holin
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
rhom Romboutsia hominis
Pathway
rhom00550
Peptidoglycan biosynthesis
rhom01100
Metabolic pathways
rhom01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
rhom00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
FRIFI_0494
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
FRIFI_0494
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rhom01011
]
FRIFI_0494
Enzymes [BR:
rhom01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
FRIFI_0494
Peptidoglycan biosynthesis and degradation proteins [BR:
rhom01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
FRIFI_0494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
NNH5
DUF4183
Motif
Other DBs
NCBI-ProteinID:
CEI72042
UniProt:
A0A2P2BNT4
LinkDB
All DBs
Position
1:564523..567522
Genome browser
AA seq
999 aa
AA seq
DB search
MEKNKKIDRLLIIKRIIICVFIVISFKILYMTIFRHDYYKELAENKTYKELPIKAPRGEI
RDRYGRLIAGNKNLFTVQVSADGISKKGADGKPMANEISLDIINLLESNKEQYIDEFPIY
FKNGKFYYTFDDKIDKYKEEEGIPKELNAKESFYFIVDKLISEGVLTKEDRNLDPSKLQK
KLNENGEYPPILVSKWMFTEEKNKKDWLESYKIKNPDISAKNAFRDIRNDYKIDPKLSNT
DARKILIVRDLIKSQGYSRYNPVTIAKDINQNTISQIEEKGMELPGVSVAVEPVRYYPET
NLASHIIGHMGKMPYNQEEKYLNPEKEGKKYSKGDTVGITGVEKSYEEKLKGVDGHKKVQ
VDALGRVTKELDVQEPQSGDTVYLSIDKDLQEVAQDVLKRTIDVARTAGTFKSPFGNKSF
SQAAPRANSGAVVAIDVKTGDVLAMASYPDYDPNKFVNGISYEDYEKLQPKNKNDVLAPN
AQVNLATQGVFQPGSTFKMVTGMAAIDNGMNPNYTINDPGVIMLGNRPFADYVWHKSRSN
HGATNLYKAIQESCNIYFYTIGSGENRVGGKDPNVKIGPNDTLKYAKLFGLDDYTGLNDE
IDEKKGSVPSIETKLKSAKALLRTFLEKEMKNKFTDITKEKNEAEYEKRIDEIVSWADEP
TTVTRGEAIERLAKLNVKEKDIEPLADEIVFNHLKFAKWSIADTFNLSIGQGENQYTPAQ
MARYTAAIANGGDLVDLSVINRVVPSDYKSVDIDENKKEKIPFKNSENLKHITEGMKRVT
TSSSVKSLFKNFPVSVAAKTGTAEKSGKIPTENEVDYLKSHMGSYGVALDQALSLAETLK
EGREQELSEEREKELKEELKSKDITEERKKEIEEELKEGVSVKLDKNDDKINAAYLRKAI
KQLNPKITDKEIDRYKADYDSFAWSVGFAPADDPEIAVVCMIPQGDSSTYAMLPVRELIG
TYLGLTDDYLAANKGTAKKEESSNKSNNDDINFASQMKK
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaaacaaaaagatagatagattattgataataaagagaatcatcatatgtgta
tttatagttatttcctttaaaatattatatatgactatttttagacatgactattataaa
gaattagctgaaaataagacatataaggaattacctataaaagctccaaggggagaaata
agagatagatatggacgtctaattgcaggaaataaaaatttatttactgtacaagtatct
gcagatggtataagcaaaaaaggcgcagatggtaagcctatggctaatgaaatatcatta
gacataattaatcttttagagtctaataaagagcaatatatagatgaattccctatatac
tttaaaaatggtaaattctattatacgtttgatgataaaatagataaatacaaagaagaa
gaaggtataccaaaagaattaaatgctaaagaaagtttctactttattgtagataagcta
attagtgaaggtgtacttacgaaagaagatagaaatttagaccctagtaagctacaaaaa
aagcttaatgaaaatggagaatatcctcctatacttgtaagtaaatggatgtttactgaa
gaaaagaataaaaaagattggttagaaagctataaaataaaaaatcctgatattagtgct
aaaaatgcatttagagatattagaaatgactataagatagaccctaagctaagtaatacg
gacgctagaaaaatacttatagttagagaccttataaaatctcaaggttattctagatat
aatccagttaccattgcaaaagatataaatcaaaatacaatatctcaaattgaggaaaaa
ggaatggaacttccaggggtatctgtggcagtagagccagttagatattacccagaaaca
aatttagcttctcacataataggtcatatgggtaaaatgccatataatcaagaagagaaa
tatctaaatcctgaaaaagaaggtaaaaagtactcaaagggagatacagtaggtataact
ggtgttgaaaagagttatgaagagaagcttaaaggtgttgatgggcataaaaaagttcaa
gtagatgcactaggtagagtaacaaaagaactagatgtacaagaaccgcaatcaggagat
actgtatatctaagtatagataaagacctacaagaagtagctcaagatgtattaaagaga
actatagatgtagctagaacagcaggaactttcaaaagtccttttggaaataaaagtttt
tcacaagctgcacctcgtgcaaattcaggagctgtagtagctatagatgtaaaaactggg
gatgtattagctatggctagttatccagattacgatcctaataaatttgtaaatggtata
tcttatgaagactatgaaaaattacaacctaaaaataaaaatgatgtactagcacctaac
gctcaagtaaacttagctactcaaggggtattccaaccaggttctacatttaaaatggtt
acaggtatggcagctatagataatggaatgaatccaaattacacaataaatgatccaggt
gttataatgcttggaaatagaccatttgccgattatgtatggcataagtcaagaagtaat
catggagcaacaaatttatacaaagctatacaagaatcatgtaatatctacttctacaca
attggtagtggtgaaaatagagtaggtgggaaagaccctaatgtaaaaataggtccaaat
gatactcttaaatatgctaaattatttggattagatgattatacaggtcttaatgacgaa
atagatgaaaaaaagggtagtgtaccaagtatagaaactaaattaaaatcagctaaagct
ttacttagaacatttttagagaaagaaatgaaaaataagtttactgatataactaaggaa
aagaatgaagctgagtatgaaaaaagaatagatgaaattgttagttgggcagacgaacca
actacagtcactagaggtgaagctattgaaaggcttgctaagttaaatgttaaagaaaaa
gacatagagcctttagctgatgaaatagtgtttaatcacttaaaatttgctaaatggagt
atagcagatacatttaacttatctataggacaaggtgagaatcaatatacgccagctcaa
atggcaagatatactgcagccatagcaaatggtggtgatttagttgatttatcagttata
aatagagttgtacctagtgattataaatctgttgatattgatgaaaataaaaaagaaaag
ataccatttaaaaatagtgaaaatctaaagcatataactgaaggtatgaagagagttacg
acttcaagttctgttaagagtttatttaagaacttccctgttagtgtagcagcaaaaaca
ggaacagctgaaaaaagtggtaagatacctacagaaaatgaggttgattatttaaaaagc
catatgggatcttatggagtggctttagatcaagcgctaagtcttgcggaaactcttaaa
gagggaagagagcaagagttatcagaggaaagagaaaaagaattaaaagaagaactaaaa
tctaaagatataactgaagaaagaaagaaagaaatagaagaagaattaaaagaaggtgta
agcgttaaattagataaaaatgatgataaaataaacgctgcatacctaagaaaagctata
aaacaattaaaccctaaaataacagataaagaaatagatagatataaagcagattatgat
tcttttgcatggagtgtagggtttgcaccagcagatgatccagagatagcagttgtatgt
atgatacctcaaggtgattcaagtacttatgcaatgttacctgtaagagagttaatagga
acatatcttggattgacagatgattatttagcagctaataaaggtactgccaagaaagaa
gaaagtagtaataaatcgaataatgatgatataaattttgcttctcagatgaaaaaataa
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